RNA id: TU154987



Basic Information


Item Value
RNA id TU154987
length 610
RNA type TUCP
GC content 0.48
exon number 4
gene id AMCG00002500
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16958161 ~ 16960082 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCGATCACTTCCTGGTCATTCACTGATTTAATGCCGGAGCGGCTCAGTCTTGCTGTGTCGTTTCCAGTGTAATTTTTTCCAAACTTTGGTGGGGGATTTCTCTGCGTAATCTACTGCCAACATGAAACTCGTACGATTTTTGATGAAGCTGAGCCATGAAACGGTCACCATTGAGCTGAAGAATGGCACCCAGGTTCATGGCACAATTACAGGTGTGGATGTGTGTATGAACACTCACCTGAAGGCTGTGAAGATGACCTTGAAGAACAGGGAGCCCGTGCAGCTGGAGACCCTGAGCATCCGTGGGAACAACATCCGCTACTTCATCCTGCCCGACAGCCTGCCGCTCGACACCCTGCTGGTGGACATCGAGCCCAAAGTCAAGTCCAAAAAGAGAGAAGCAGTGGCGGGCCGTGGCcgggggagaggcagaggaagaggccggggcagaggaagaggaagaggaggaccCAGGAGATAATTCACTCTGCTGTGCCATCGTGTCTCCTGCATATGTTTGTACAGGtttttttgaatttttttttttacttcacaggaaaatgtttttgacactgaggtgtaatttttttttttttttttttatatataa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154926 lncRNA upstream 165362 16792100 ~ 16792799 (+) True G123568
TU154877 lncRNA upstream 303277 16653499 ~ 16654884 (+) True G123526
TU154876 lncRNA upstream 306197 16651542 ~ 16651964 (+) True G123525
TU154813 lncRNA upstream 468209 16485826 ~ 16489952 (+) True G123468
TU154713 lncRNA upstream 1163012 15794408 ~ 15795149 (+) True G123388
TU155013 lncRNA downstream 20711 16980793 ~ 16985904 (+) False AMCG00002496
TU155044 lncRNA downstream 131893 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA downstream 177331 17137413 ~ 17141435 (+) True G123659
TU155212 lncRNA downstream 735778 17695860 ~ 17760195 (+) True G123797
TU155224 lncRNA downstream 966617 17926699 ~ 17940633 (+) True G123808
AMCG00002495 mRNA upstream 1591 16937361 ~ 16956570 (+) True AMCG00002495
AMCG00002499 mRNA upstream 24643 16925317 ~ 16933518 (+) True AMCG00002499
AMCG00002493 mRNA upstream 43209 16906745 ~ 16914952 (+) True AMCG00002493
AMCG00002494 mRNA upstream 57249 16856507 ~ 16900912 (+) True AMCG00002494
AMCG00002497 mRNA upstream 133938 16821699 ~ 16824223 (+) True AMCG00002497
AMCG00002496 mRNA downstream 16206 16976288 ~ 16985906 (+) True AMCG00002496
AMCG00002502 mRNA downstream 27020 16987102 ~ 16992955 (+) True AMCG00002502
AMCG00002501 mRNA downstream 42966 17003048 ~ 17016246 (+) True AMCG00002501
AMCG00002507 mRNA downstream 135654 17095736 ~ 17102119 (+) True AMCG00002507
AMCG00002506 mRNA downstream 147317 17107399 ~ 17136520 (+) True AMCG00002506
TU154081 other upstream 3828464 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 3896476 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 4817696 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 5121992 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 5263996 11688600 ~ 11694165 (+) True AMCG00002331
TU155222 other downstream 955354 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 1871932 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 2170321 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 3314007 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 6108042 23068124 ~ 23180043 (+) True AMCG00002623

Expression Profile