RNA id: AMCG00002507


Basic Information

Item Value
RNA id AMCG00002507
length 2046
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00002507
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17095736 ~ 17102119 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGAGGTCAGACACACAAACCGAATGGACACAACATTCAAGCAGAGTATATTGTAGGTGTAGATGATTATTATAACCCGATGTTAAAAATGGCTCAAACTAAAGAATCCGCCGATTATGAAGACGCTTACCGTCCAAAACCTGAACATGCAGCCGAGTCTCCGTGCCCCTTGACTGACACCCTCTCCAGCTCCGCGCCCCCCCAGCAGAGACCCGGACACACGGCCAGAAGTCTGTCCCCCGAGGAAATGGAGAAACTGGAAAGAGATCAAACCACGGTGCCAGACTTCAAGCAACAAAAGCTGGAGAAGGACGCTCAGAGAAACTGGGACTTGTTCTATAAAAGAAACAGCACAAACTTTTTTAAAGACCGACACTGGACCACAAGAGAGTTTGAGGAGCTGAAAGCGTGCAGAAAGtttgatACTCAGAAGCTTATCCTGTTAGAAGCTGGCTGTGGAGTTGGAAACTGTGTCTTCCCTCTGTTGGAAGAAGATCTCAATATCTTCGTCTACGCCTGTGACTTTTCACCAAGGGCAGTAGAGTTTGTGAAAcaaaACCCCTTGTATTGTGCCGATAGATGTGAGGCATTCCAGTGTGACCTGACCAGAGACGACCTGCTGAAGAGTGTCCCGTCTCAGAGCGTGTTGAAACCTGGGGGGATCGTCTTGTTCAGGGACTACGGTCTGTACGATCACGCCATGCTCAGGTTTAAATCCGGCAGCAAGCTTGGGGAGAATTTCTACAATTGCTGGCAGATCTGTTCGTCACAGCCGGCTTTGAAACCTCGATCAATGAATATGTCCTCCGAGAGACTGTCAACAAGAAAGAGGGACTCTGTGTTCCAAGGGTATTTCTCCAGAGTAAATTTAAGAAGCCAGACTGAGAGAGGATCTGTTACCGATCCGGGTGCTGCTAGCAAAAGGAATGACCTCATTTCTGCATGAATCCTTTCAGCAGTTATTGATGCCGGTCATGCCAAAATCTCAGCTGACCACGTCCTCCTGTGGGTGTTaggatttccattttaaataaaggattttCTGTTCTTGactatgaaaaaaacaagtttaatctCTAAATCTCAGCGTTCCGTGTTTATATCTGCAACTACTCTCTGTAATTATAATGGGCAAAATCAACACTGTCGGTAATACAGGTTATCTTGGAATGAAAAAATTATCTACATTTGTTTAATCTACAAGTGACTAACGTCTATGGGCCTCTAATGCTTCCACTTAGTAACAATAATCCAtaggtttattttataatgacaCTATTATAAAATGGCTTTGAGTGATTTTCCCATTTTCCTGTTAAATAAAGGAGCAAAATAACATGTTAGCCTGACAGCAAACCATTTAATGATCACAGATggaaaacttaaacaaaataccaTAGGAGATGATGTTCGTCTAGCAATGGGTGCACTACCAAAGATACATATTAATTAAGCAAACAGAAATGCCGCACATTAGTTTGGTTGCTCCTTTGTGGCACCAGGGGGCAGCAGATCCACTCGCCAGGGTAGAAGGGGTTTTAAAAGGTGGCTTCTACTTCTATTCTAGTGAGATTTTCTGTTTTGGAGATCATTCCAAGCCTGCTTGACTTCAGCTGGTGTGATTCTTTTCAGAAGCCTCATCAAAATTCACGTGCCGTACCTTCCTCTTTTCCACCCCAtctttttcagatattttcacTTGCATTCCGTTTGATCATCAAGCGGCCTTCTGAGATCTGATGAGCACATGTTGTTTATCTCATCCCGTCAGAAATGCGAGATCAATTACATGTTTGCCAGGCTTGTGATGAAAGCACATGACAGTGAGATAAAAGGGGCACGTTTCTTATGCAGTTTGACTGTTTTCCTGAGACAGAATAAAAGGAATGTACACGCTgcaacaattttttttatccatatttaaatgtatgtatatttaatgatcTCTTGCAACAAGTCTGCTTAAATCTTTGCTGTGACTCAACACCTTTTTCACCATGGCAATGAAACAGCctcctggaaataaaataaataataaaatcac

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00599 METTL6; tRNA N(3)-methylcytidine methyltransferase METTL6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155013 lncRNA upstream 109832 16980793 ~ 16985904 (+) False AMCG00002496
TU154926 lncRNA upstream 302937 16792100 ~ 16792799 (+) True G123568
TU154877 lncRNA upstream 440852 16653499 ~ 16654884 (+) True G123526
TU154876 lncRNA upstream 443772 16651542 ~ 16651964 (+) True G123525
TU154813 lncRNA upstream 605784 16485826 ~ 16489952 (+) True G123468
TU155050 lncRNA downstream 35294 17137413 ~ 17141435 (+) True G123659
TU155212 lncRNA downstream 593741 17695860 ~ 17760195 (+) True G123797
TU155224 lncRNA downstream 824580 17926699 ~ 17940633 (+) True G123808
TU155257 lncRNA downstream 948893 18051012 ~ 18052338 (+) True G123833
TU155357 lncRNA downstream 1402769 18504888 ~ 18509774 (+) True G123916
AMCG00002501 mRNA upstream 79490 17003048 ~ 17016246 (+) True AMCG00002501
AMCG00002502 mRNA upstream 102781 16987102 ~ 16992955 (+) True AMCG00002502
AMCG00002496 mRNA upstream 109830 16976288 ~ 16985906 (+) True AMCG00002496
AMCG00002500 mRNA upstream 135767 16958243 ~ 16959969 (+) False AMCG00002500
AMCG00002495 mRNA upstream 139166 16937361 ~ 16956570 (+) True AMCG00002495
AMCG00002506 mRNA downstream 5280 17107399 ~ 17136520 (+) True AMCG00002506
AMCG00002513 mRNA downstream 102344 17204463 ~ 17248752 (+) True AMCG00002513
AMCG00002512 mRNA downstream 168462 17270581 ~ 17272452 (+) True AMCG00002512
AMCG00002517 mRNA downstream 182952 17285071 ~ 17291512 (+) True AMCG00002517
AMCG00002511 mRNA downstream 220516 17322635 ~ 17353428 (+) True AMCG00002511
TU154987 other upstream 135654 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 3966039 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 4034051 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 4955271 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 5259567 11835439 ~ 11836169 (+) True G122582
TU155222 other downstream 813317 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 1729895 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 2028284 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 3171970 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 5966005 23068124 ~ 23180043 (+) True AMCG00002623

Expression Profile