RNA id: AMCG00002508


Basic Information

Item Value
RNA id AMCG00002508
length 4315
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00002508
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17080504 ~ 17090314 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGTCTGGTCTCGCCGTTTACGTCACCGCGTTAGGACGTTACGTTGGCAATCAGTGCGCGTCTGACTGAGACCATCAGGAAACATCTCCTCATCCGTGCGGCGGCAGAGGAGCGCAAAATCCCGCCCGGCGTGCAGTATTGCGTGTTCACCCCAGCAGCGACCAAACCCACCATGCGGACGACGTGCTAGAGCCAGAGAGCCCCAGCTTGCGTCCAACGTTACCGAGGGTGTGCACGCATCTTCCCTGGGAAAGcgcctctcctctcccctcctccaggTGCATCGAAACAGCTGACAAAGGATGGATTTCAAGCAGCTGGTGGACGTAGCCGAGAAATGGTGCTCCGGCACCCCTTTCGACCTCATTGCGGCCGAGGAGGTCGACGAGCGGCGCTTGGATTTTTACGCGGAGCCCGGGCTTTCCTTCTACGTCCTGTGTCCAGACATGCACGGTGGGGCTGATCATTTTCACGTGTGGAGTGAGAGCGAGGACTGCCTGCCCTTCCTACAGCTGGCTCAGGACTACATCTCCTCCTGTGGCAAGAAGACTCTCTTGGAGATCCTGGATAAGGTGTTTCGGTCCTTCAGGCCTCTGCTGGGCCTCCCTGACATAGACGACGACGCGTTCGAGGAGTACCACGCGGAcgtggaggaggaagagcccGAGGCTGACCACCAGCAGATGGGCGTCAGCCAGCAGTGACGGAGCCGAGGGCCGGGCAGGGGAGAGGGCGCTGGGGCCGCAGCAGGGACCCCGTGGGGGCTGCACCTTTCCGACACAACCAGGACAGCCAGCAAATCCTAACCCCTGTGTCCCTCTCAACTGCACAACAGTAACGCTTCCCAAGTACGCTATCAATAGGCTTAATACTCCAGCTGTCCATACACTTCTACACACGTCCTGTTCAAAACTGGGTGGCAGGAGGCTATTGTCAGAGGAACAATTTCTGggactttttgttttcctttggtTTTATGATGAACAACATGCCAGTGGCGTGATATAGTATAAGCAGTCGATTTTAAttacgtttttattttaaacttgcatttgctccccctctccatcaccacttccatttttaaaatgtacgaTAAGGTTTAATTTCCTGCAGATGGGTACTTACAATGCACCACTAAGGCATTGTcaataattgctttattgttaaAGGCAGTTAGTCGACACTGGtgtcaaatcaaatatttttcaggTTGTAAAAGAAAAACGTGATATAGGTGACCGCGGACAGAGCTGCTCAGATAGTCATGTGAATGAAATCGAGTAAAATAGAATGCAGCGCAGGGATTTTATAAATAGGCAAGAGTCTGTTTTATCACAATTATAAATTACTACTGAAACTCAACACGGAGCCTGggacaaaatgttttaaagtattttcagtGCTGTTTGGTTGAGGTGTGCATCAGCTTTACAATCTGAGCTGTGCAAATAGCAACCAAACCTTAATGTCCACATTTAACCACTTCCAAACTAACAAGCAAATAgcagggaaaaaataagaactaAACACCTTGCACTTGATGATATAAGCCTTTTATACGCTATTCACTCAAGGTTACACAGTACGTAATTGTGAAGGAATGGCTGTTTAATTTCAGCATAATAGGAGTATTAGACCAATCAGGAAAGAAGTGTTCCCGACTTTAATTCAGTTGTTTCTGTATTGATTTAGTTGTAAAATTAGAAGAACTTTGTAATCCATCTCTCTGTGAGGTTTTCATTACCATTAACTGAAGGGAAGATACATGTgtctctaatatatatatatatagaaattgGTTCCAGTCCTGgaagctgctgtattttgtcGATTTGTGTAGAGAAGGGCATTCTTCGGATTTTGAGTTGTCCTCAGACGTTTCATTTCCCTCTGATTTCACTGCGTCTCCTGAAATTATATCATTTTATTCTTCTCCAGTTTGTGTATAGTGAAGTAGTGATGGCTAAATGGCACTTTGCATTTGAATTGTAATTTGCTGAAAAGCACTACAGGAAAACGTAAGTGGCACTTGACTTGGAGTAATCAGAAATGTTTTGCAGTCGGTTGATGGCTGGCGGAACACTACAGAGCAGTAGAACAAAGGGATTTTTAATGTCCttctttaatgtaattaaactgaGCTGTGTGCTATTGCTGAAGATAGGGTGGTTCAGTGGGTGTGGAGAGTTAGCTGGGATAGGAGAATATGAAATGGGACACACGGTACGTTAAACCGCACCAGAACCAGAGCAGACCGCAAACCCATTCCTGAGGTCCACAGTCTTAAATCAAGGTATCTCTTCAGACACCTCAGACCACACCAAGCAAACGGTatatcaaaagaaaacacttctTACTGAGGATTTATGTTggagtttatatatttttactgttttaaaaatatccacTACACTGCACAAACGCAAATAGTAGATCTGGATCAGAAAAAGAGTTTTAAATCATCTTATTAAGAGACGACTTGCAGGATAAAGGCAGTATGGTTGCCAGTGGAGACTTAATAGAATTAAGGaaatttgtgcatttttaaatcatggGTGCAAAGAAATGTTGGAAACAGAATTTTCCGCTTTAGTTCGGCCCAAAGCAACATCAGTTTTACCCCCTGACgctgtgcaaattaaaaatacagtagagACTGGGTGTGTATTTGGTCGAGGGATACAATCATGTAATGGACTTGTAATTGGCGTTGGGATGTAATTAGTCATTTTCACAAGCCTTGATGTTAATGGTAGGATCAAACACTTTTAACAGTGACTTCAATAAAACCCTTTATTCCACGCTAGTATTGGGGTTTACTTTGAAATGGCATCATACACATTAACACATTCAgaatggggaaacaaaaaaaaaaaaaagaaacctgacTTATCCTTAACCACGTTGCCTCTGCTTCTGCCAATTAAGCCTTGCTGCCTTTTCTCAGCTGCAAGGGAGTTCCCATGGACCCATCCCTGCTGCCCTTTAAATCCAGTTTGACATAATGGACAGTCTCGTCTGGGGCCCGGTACTGTAGATAGGTAATGGTGCTAATGACCACACACTTCGACACGAGGATTAAACCCGATGCTGCAGCGCTGAGATGACGTCAGTGCTCAGACAGCATGCCGCTCCTTTCTGTGGCCGATGACAGAGGTCTCGATCCCTGGCTCAACTTGTGGTGTTTTTCTTGGGTTGTTTGAAGAGGCTTTTTAACCGCCAGGATGACCCTagttatgtattaaaaataatatttaaacctACGATCTGATGGGGTTCATCCTCTGCATGGTAGCGAAAGGTAAAAGTAGCTTGAATGACTCAGAGTATTGATTTTGAAGATGTGCCCTGTGCACTACTAGAGTAATCTGTCCCTGGAGTTTGTTCCTTAGCTTTTCTGGGATTCTTGGCATATTTGATTTCTCAGTTGGGTTTTTCACTCGTGTAAGTGAGAGATGAGTATTTGCctgcgttttatttttattttttattcattaaacataATCATTCTTCTCGAACTCCTCGGGTGTCCCTGtgcttctgaaaataataactaatacaaaacCAGTCTGTTAGTAAATGTGCTTGCCAATAACATACCCTGCAGGGTTTGCTAATGGTCTTCGCAGAAACCGTTTAATTTATGCCCATTCACTCCCCTCGGTTAATTGTTTCTCTGATAATACTCGGCAAAGAACAAACGTGGTACAAAAACTCACTCCGGCCTTAAGAAACAAGAAAGACATCATtcctaattaaaatgatttttttccctttctcccATGCATATTGACTTTATTGAGCAATCTTGCATATcggtatatattttcaaaagcagaacAACACTGTGGGTCCAGACATAACCATTGCCTGGTGAGTTTGATTGTAAACCGTTGCCATACAGCTCCTAGTTTCCATGCGCAGGCCTTGAGCACCTAACTGTGCCGCAGGTGAAACGTCAGGGTCGTCCCCCAACAATGTGTGGCCCTTAACTTGTGATTCCTCtggatttcttttcttttcttaatttgatttttaatttgctgtgtcGCAGCTGCCTACTACCTGTCCTGGGTGTTTACTGTACctgtaattaaatgcaattaatataaattaaagtctCCAGTGAGATCAAGCTTCACAACACTGTCGTGGGATTTTGCCAGTCTTGTTTCATAGATTTGTTTTGGCCATCTTGCTCTGGCACTGGATCTGCTCATGGCTTTTATGAACTTTATGAAAGTACACCTAGGgcttgtttaatttgtatttctttgcttttttttttttttttttttttaatctgattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155036 lncRNA downstream 4955 17075312 ~ 17075549 (-) True G123646
TU155030 lncRNA downstream 30448 16995129 ~ 17050056 (-) True G123642
TU155025 lncRNA downstream 97858 16980831 ~ 16982646 (-) True G123637
TU154999 lncRNA downstream 120397 16958162 ~ 16960107 (-) False AMCG00002503
TU154878 lncRNA downstream 425641 16653499 ~ 16654863 (-) True G123527
TU155101 lncRNA upstream 144056 17234370 ~ 17238544 (-) True G123705
TU155202 lncRNA upstream 569753 17660067 ~ 17675110 (-) True G123788
TU155213 lncRNA upstream 599724 17690038 ~ 17696504 (-) False AMCG00002524
TU155242 lncRNA upstream 721204 17811518 ~ 17815466 (-) True G123824
TU155254 lncRNA upstream 843150 17933464 ~ 17994763 (-) True AMCG00002533
AMCG00002504 mRNA downstream 8579 17063407 ~ 17071925 (-) True AMCG00002504
AMCG00002505 mRNA downstream 27698 17021419 ~ 17052806 (-) True AMCG00002505
AMCG00002503 mRNA downstream 106203 16958201 ~ 16974301 (-) True AMCG00002503
AMCG00002492 mRNA downstream 232388 16847424 ~ 16848116 (-) True AMCG00002492
AMCG00002490 mRNA downstream 249233 16824229 ~ 16831271 (-) True AMCG00002490
AMCG00002509 mRNA upstream 2592 17092906 ~ 17097083 (-) True AMCG00002509
AMCG00002510 mRNA upstream 46862 17137176 ~ 17158023 (-) True AMCG00002510
AMCG00002514 mRNA upstream 93087 17183401 ~ 17185908 (-) True AMCG00002514
AMCG00002516 mRNA upstream 216952 17307266 ~ 17308556 (-) True AMCG00002516
AMCG00002515 mRNA upstream 264336 17354650 ~ 17371962 (-) True AMCG00002515
TU154950 other downstream 240782 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 2134193 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 3426268 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 4051098 13028197 ~ 13029406 (-) False G122862
TU155250 other upstream 832138 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 5995680 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 6091607 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 7171251 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 7201473 24291787 ~ 24339566 (-) True G124848

Expression Profile