RNA id: AMCG00002511


Basic Information

Item Value
RNA id AMCG00002511
length 6715
RNA type mRNA
GC content 0.41
exon number 25
gene id AMCG00002511
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17322635 ~ 17353428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCATTAAAATTGAAGAagcagatatatattttttgattgaTGGCTCAAGCAGCATAAAGAATACAGACTTTTTTGAAATTAAAGACTTTATAAATGGTGTGGTTGATAACTTCAACATTGGACCTGATAGTGTGCGCATTGGAGCAGCCCAATTCTCCACAGAAGTCAGAAATGAATTTAGTGTAACTTCCCACAATAGCACAAATGATGTAAAACGGGCAATTGAAAACATCCGCCAAGATCACGGAAAAACCAAGACGGGACAGGCTCTCAAGTACATGCAGAGCTTGATGAAAAAAGAAGTAAAGGCAAAAGTAAGACAGTACCTTCTAACTGTAACTGATGGCAAGTCAGATGATGATGTGAGCGAGGTGTCAGAAACCCTCAGAAAGGATGGAGTGATCACTTATGCAGTTGGTATTGGAAAGGCAAATATAACAGAGCTTGAAACGATTGCAGGTTTCAAAAATAGGTCCTTCTACACCACACAATTTGATTTCCTTAAGGATATAAAAAACGAAGTGACTCGGGAAATCTGTTTAGAAGAGGCCTGCAAGAAAAGTGAAGCAGATATAGTGTTCTTAATTGACAGTTCTGGGAGCATTAATCCCACAGACTACACCAGCATGAAACATTTCATGACATCAATTGTAAACAAATCAGACATTGGGAGAGACAAAGTACGTATTGGTGCAATGCAATACAGCTATAAAGTGCAACCTGAATTTGAATTGGATAAACATGTCCAGGCACCTGACTTACTGCAAGCCATTGACAACATGCTTCAACTGGGTGGCGGAACTTTGACTGGAGAAGCCCTTAAATCGGTCTCTAACTATTTCAAAAAAGCACGCCCCAATGTCAACCGCATCCTCATTGTGATAACTGATGGTGAGGCTCAAGATGAAGTTTTACAACCTGCTAAGGATTTGCGAGAAAAAGGCATAACTATTTTTTCTATTGGTGTTTTTGGTGCCAATTACTCTCAACTGGAGGAAATAAGCGGCTCTcgccaaaacattttttttatcaacaaaTTTGAAGAGCTCAATAGTATACTGGACAAGGTGCTTTTCAGTGTATGCAATCCCTTTAAAGaGTGCCGTAAAATAAACGTTGCCGATATAATGTTTGTCATAGACACATCTGGAAGTATTCCTTCAGAGGGATTTCAAAGTATGAAGGATTTCATGTATGCCATGGTAAAGAACTCTGACATTGGGAAAGACAGGGTACAGATTGGGGCAACACAATATAGTGACGATCCTCGGAGAGcctttgatttaaatgaaaaccatgacAAGAGGTCACTGGAGCAGGCCATCAAAGCAATGCATCTCTTCGGGggaaacacatacacagcaaAAGCTCTCAATTTTTCCAAAGACCGTCTGGCAGAATCGTTTGGTGGGCGCAAAGCAAGAGGTGTTCCACAGATTCTAATCACAGTGACTGATGGAGAATCTCATGACAGGGAGCTCTTGAATGTAACGTCCCAGTACATCAGAAACTCTGGTATTATTACTTATGCTATTGGAATAAAGGATGCAAAGAAAGAGGAACTCCTGGCAATTGGGGGGTCTAATGATAAGTACTTCTATGTGGATAATTTTGATAAATTAAAAGAGATTGAACAGAGGATTTCTGAAGTCATCTGTAATTGCGAAAGAGATGAAGCAGAAATGGTCTTCTTAATTGACGGCTCTAGCAGCATCTCACAATCTGACTTCAGAATCATGAAGAGCTTCACAAAAAACATGACGGACATTTTTGACATCAGCAAAGGAAAAGTACAAATTGGTCTATCTCAATACAGTGATAAATACCAGAAAGAGTTTGATCTCAAGGAATTCACGGACAAAGTAACAATTCACAGTGAAATAGACAAAATTAATCAACTCTTTGGAAACACACTCATAGGAAAGGCTCTTGAACATGCAAAGGAATTTTTCAAGACACCTACTGGTAGCTGGCGAACTGCTAAAGTGGCACAGATTTTGATTGTAATAACAGATGGAGAATCACAAGATGACGTTTCAGTGGCAGCTCAAGATCTCCGAAATCAAAATATAGACATTTATGCAGTGGGTGTAGGTAAATTTAATGACCAACAGATGTCGCAGATTGCTGGAGATAACGACAGAGTGTTCAAAGTGGAAAAATTTGATGAGCTTCAGCATCTTAAAAAGAGGGTTGCCAGAAATATATGCCCTGAGAAACATGAACGCTCAAACTGCAGTGTAGACATTGCTGTGGGTATTGACATTTCCAAGCAACCAGCAGGAACATCCTTATTCTCTGCTCAGCACCATCTCGAAGTGTTCCTCCATAATATAATCAGGAAAATTAACTCTCTTGAGAAGGTCAGCTGTACTCCCAAATCACAACTACAGATCAGCTTTGGCTTTGAACTTAATAATGTAGAAAATACATACCAGACCACATTCAAAGAGTGTAAAGATGATGACATTGTGAACAAACTGAAGACACTAAAGATCCGTGAGCCCTCTAAGCTCAACACAGCGTACCTACAGTCATTCTGGGAGAAGTTCACCCGCGAATCGGACGCAACTACGAAGggCCGTGTAGGCTGGCCAGGACCCCCGGGCCATCCAGGGGAAGAAGGGACACCTGGAACACGTGGGCCTCCGGGGCCTGCTGGCTCACCTGGTTCAATTGGGGAGTCAGGGGTAGCCAAGGTGAAAACGGAGAACACGGAGAAGACGGACTGGATGGAGTCACAGGCGAACAggGTTCTTATGGTGCAAAAGGTTCAGTTGGAGACAGGGGGGAGCCAGGCATACGAGGAGACCCAGGGCTTCCTGGAACTGATAACAACAAccctggccttgaaggagagaAGGGTAAACCTGGCCCCCCGGGAGATTTTGGTGTGGATGGCAAACCTGGAACTGGAGGCCCTCCAGGACGAAAAggaTCTAATGGAGTCGTTGGTGATAATGGTCCACAAGGAGAGTCTGGTATTAAAGGACCGCAGGGCTCTCAAGGAACTATTGGCACAAAGGGAAGTAGAGGGAATCCTGGGTGAGCCAGGAGACCCTGGTGTAAAAGGAGAGATTGGTCCCATTGGCCCCCGAGGGACACAGGGAGAAGATGGTAGGGATGGATTTGGAAAACCAGGAgtcaaagggaaaaaaGGAGAATTTGGAGAAAACGGCATTAAAGGAGAAATGGGACAAAAGGGCAATCGAGGAAGAAGAGGCTCGGGGGGGCCTCCTGGTGAACCCGGCATTCCAGGTTCCAATGGACCGTTTGGACGCAAGGAGTGTCAGCTTCTCAGTTACCTACGCTCTTACTGTGACAGGGTTGGTTGCCCAAAATATCCTATTGAAGTAGTGTTTGCCCTGGATATGTCTGCTGGCGTGACACAGCAATTGTTCAACAGAATGAAGAACATAGTTTCTCTAATGGTAAATGACATAAACATCAGCGAAAGCAACTGCCCAATAAATGCACGAGTAGCGGTGTTATCCTACAATTCCAACGTGAATCATCTGATCCGCTTTGTGGACCATCGCAAGAAGAAACACCTACTGGAGGCCGTGAAAAGTATTGGCTTTACACGGTCCTCTAATGCACGGGACCTTGGTGCGGCCATGAGGTACATTGCAAGGAATCACTTCAAGCGCACGCGTCATGGATCTCTGGTTAAGAAGATGGCCTTTATCCTGAACAATGGACCGTCCAAAGACTTGGAATCCATAAATACTGGCCTTCTAGAATTAGGTGCAAATGACATCGCCACAGTACTCATTGCTCCTGCCGACCTTCCCAAACTCTCTGCTGCTTTTTCGATTGACCGTAGCAAGTTTGAGTTTGTCACCATAAAAGATTTTCAGAACCCAAACAAGACTTTGTCCAGATTGCAAAGGTGTTATTTTTGCTATGATTTTTGCAATCCAGATTCAGAATGCAGACGACAGCCACAAGATATCCCTATGGCCAGCCCTATTGCCAGCCAGGATATGGATGTAGCTTTTTTTATCGACAACTCCAAAGGAATGAATTGGCATAAAACTAGAATCTTTCTCCAATCACTGATGGAtaattttttattcaaaactgaCCCAAGGACCTTCGAAACCAAAACAAGAGTGGCCCTTGCCATGCGTGGTGAAAGATGGGACCAAAACCCCGTATCAGTGAAATTTGATTTCAAAGAGGAATTGACCTTCAATGCAATTAATAGGAATATGATAAACTTGGAGTACAGGGAAGGCTCTTCTGGGATTGGACAGTCTTTGGAGTGGATGTTGACCAATCTGTTCGGAAAGCTGTCCCAACCCAAAACCACCAAAGTGATCTTTTTAATTCTCAGTGAGAAGACTGAGACTTGGGACCAGAAGAAACTGTCTGAAATGGCTCTCAAGGCCAAGTGTAAAGGGTTTGTACTTTTTGCATTGGTACTTGGGAAAGGTATCAATGACATGGAGGTGGAGGAGCTAGCTAGTCTTCCTGTCAGTCAGCATTCTTGTCAACTGGGAAGTATTACTGAGCCTGACATGGATTACGCACTGAGGTTTTCACTGACTTTCTTCAACCAGCTAACAAAGAAGTTCAATGCTTATCCTCATAAAGATCTTCAAACAAAGTGTAAACAAATTGATAACCTGGGGGTGGTTCAAGACGATGATGGACAACTAATGGCTGATGAAAGATTTCCAACTTTGACCATGAATGCAAAGACTGAAGAACCACTGAATTTAATTCAAACAGAACCTGAAACAAACCCAGAACCTATCAAGGAGGAAACACGTGTTCAGGATCCTGAGAAGATCAGTCTAGACGACAGGCAGACCATAAAACCCATTTCACATCTCTCTAAAAATCGCTGTCTACAGCAGAGAGACCATGGCAAATCATGCAGTGGATCCCAAAGGATAAGATGGTTTTATAACAAAGCCACCAACACCTGCCTCCCATTCAGGTTTGGTGGCTGTGGTGGTAATGGCAATAGATTTATGACAAAAAAATGGTGTCTTCACATATGTGCTTCGTAAAGTATGTATGACAAAACGGTGAATTATAAGAACGGGTGCTGGGTTAggttttgttataaaaaaaaaattgtagaaAGTCTTACTTAACAAGAACCCAAGTAAAAAATGCAAGTTTTAAGatttgaagagaaaaaataattgaatgacaTTGGTTTGTCTCCATATTAAAAACCTTTTACATATGCTATCACAGTGTAGGACTGAGAATTAGtagtattttaatgaacaaaaaaaacctcatgtatcattttataaatgtaaaggGATTTCCTGTGTTTGTATagtttaatactgtattttcatttttattagtCTTTTAGTCATCATTTAAAGGTTACACTTCTGTAAGGCATTACAGTAATTCATAAACTCATATTaactcttttctgtttttctaaatgATAAACACTGAGGCAACTTATGTTACTGTTGCTTCTAGCATAAAAAGGGAATCATtcagtcaattaaaaacaaaaattgtgaCCGGGagatttttatttctaatgcaagaatattattttcacatgtgTCTTGGGAGGGTAGTACAGATTTggtcaaacaaaaacattctgcTTAGTCAAGTTTCTCTCCATTATAATTAGTTGTAAGCTGGAGATGAGACGAGGTGCTGTACAATATACTGATAATGTGGGTTGGTGAAATTATACCTGAGCCTTAAATTCAATATCGCTGGCTAcatatttacagtgtatttgcTGTGTCCCAGAGTTATAAGCCTCTGTatctaaattaaattcaagTTTGACTCTTCTTAGCTGTGTACAACCCTTCAGTCAGTGACTATATAATACAGCTGTCTTGAGTCACCGCTCATCTCCTTTCTTTGGCATAACTGTGCAGAATCTGGAACAAATCTTGTATTAAACCATCTGATACACCTATTCTGTGGCCTGTATTCTAATATAAGGTGGTACTATAACAGTGTGCTTTTCTATACATGGTGCTAATGTACACTGTGAGATTTGGGTGTTGTCCACTTCAGTGTGAAGGAAATATACCTGTATAACTGCTACTACAGTACTTTCCATTGGAGTCCTCAAGGGGGCAATAGGTCAAATGGGTGTGACCTGGAACTTAGACTACCTGAAGTATACTGGGGCAATACAGGTTTTACCATGacaattaatgtttgtttgagGAAGAGGAATTAGCTAGATTTGAGATATGGACCCATCTGATAGGACTTATTTTCATAAgttaaaggaataaaaaagcATTGATATCTAGCGGGGTTTGGACAATAGgcttaaattgaaattttaGTCCTAGAGGCTCATAAAGGGGATTTAGTACAAAGCCTCTGCTGGGAAACAAGTATATGGGTCAAGTAGCTTGGAGTTTGCTGGATAAAATCTATTCTGGGCCACATGCCGAAGAGGGTAAGGACCATCTACTGACAGCCTGCAGTTTGTGAAGCAATTTTTTGGGCCTTCCCGAGAAGTGAAGCCTGCATTTCTTGAGACTTTTTGCTGGAGTGGTTTTTGGCCTCCATGACACCGAACTGTTCCCAGAGGCAGTGTGGGGGACGAATGGAATGGAATCTTGAATCATTATCAGACAGAATGTTTGTATGCTATTGTCACATAAAGTTTACTTGGAAATAATTCCACATCCTAAAACACCAAATTGAACAAgtctttacttttttaattgtgctgatatgtttttgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155044 lncRNA upstream 174299 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA upstream 181200 17137413 ~ 17141435 (+) True G123659
TU155013 lncRNA upstream 336731 16980793 ~ 16985904 (+) False AMCG00002496
TU154926 lncRNA upstream 529836 16792100 ~ 16792799 (+) True G123568
TU154877 lncRNA upstream 667751 16653499 ~ 16654884 (+) True G123526
TU155212 lncRNA downstream 342432 17695860 ~ 17760195 (+) True G123797
TU155224 lncRNA downstream 573271 17926699 ~ 17940633 (+) True G123808
TU155257 lncRNA downstream 697584 18051012 ~ 18052338 (+) True G123833
TU155357 lncRNA downstream 1151460 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA downstream 1153476 18506904 ~ 18509774 (+) False G123916
AMCG00002517 mRNA upstream 31123 17285071 ~ 17291512 (+) True AMCG00002517
AMCG00002512 mRNA upstream 50183 17270581 ~ 17272452 (+) True AMCG00002512
AMCG00002513 mRNA upstream 73883 17204463 ~ 17248752 (+) True AMCG00002513
AMCG00002506 mRNA upstream 186115 17107399 ~ 17136520 (+) True AMCG00002506
AMCG00002507 mRNA upstream 220516 17095736 ~ 17102119 (+) True AMCG00002507
AMCG00002528 mRNA downstream 36517 17389945 ~ 17415896 (+) True AMCG00002528
AMCG00002529 mRNA downstream 92492 17445920 ~ 17471292 (+) True AMCG00002529
AMCG00002526 mRNA downstream 299047 17652475 ~ 17661173 (+) True AMCG00002526
AMCG00002525 mRNA downstream 308451 17661879 ~ 17675110 (+) True AMCG00002525
AMCG00002527 mRNA downstream 453307 17806735 ~ 17811727 (+) True AMCG00002527
TU154987 other upstream 362553 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 4192938 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 4260950 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 5182170 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 5486466 11835439 ~ 11836169 (+) True G122582
TU155222 other downstream 562008 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 1478586 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 1776975 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 2920661 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 5714696 23068124 ~ 23180043 (+) True AMCG00002623

Expression Profile