RNA id: AMCG00002512



Basic Information


Item Value
RNA id AMCG00002512
length 1265
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00002512
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17270581 ~ 17272452 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGAAGACCAATTGCCCTGCATACCCCACAGAGCTAGTGCTCGCCTTCGATATGTCTGAGGACGTTTCATCACCAGTCTTTGAGAGAATGCGAAAGGTCGCCCTAAAGCTTTTGGAGGACATCAGCATCGCAGAAAGCAACTGTCCCACCGGAGCCCGGGTAGCGGTCCTGTCCTACAGCTCCACCACAAAGTATCTGATCCGCTTCTCGGACTATCACCGCAAGAAGCACCTGATAGAAGCAATAAAGAACATTCCCCATGAGAGGACGTCTAACCACCGCAACATCGGGGCAGCTATGAGATTTGTGGCAAGGAATGTGTTCAAGCGAACCCGCCAGGGCGTGCTGATGAGGAAGGTAGCCCTGTTCATCTCCAATGGGGCGTCTCAAGAGGCCACACCCATCACCACAGCTGTGATGGAGTTCAAGGCTCTGGACATCACCCCTGCGGTCATCGCATTCAAGGATGTTCCGAATGTCAAGCGTGCTTTTAGGGCTGTTGAAACAGAAAGTTTCTCAGTGACAGTAGTGGAACGACCACAGGATGAGCGATCGGAGATCCAGAGAGTTCTACATTGTATAATCTGCTATGATGTATGCAAGCCCTTGGCAGCATGTAGAAGAAACCACTCCGATTCCACTCCAGAGCAATTCGATGGAGACCTGGTGTTCATGGTCGACGGCTCACACAATATGCAGACCGATCATTATGATAGGGTTAAAGAGCTTTTGAGCTCTGTTCTGGATCAGATTGTCATAAGCAACAATCCAGGCACTCCAAAGACAGGGGCTAGGGTGGCTCTTGTGCAGCACAGTCCATTGAGCTATCCTTGGAGAGTCCAGGAACCAATCAAGCTTGAGTTTGACCTCCTGCAATATGCAAACAGGAAATTAATGAAAAGGCATATTCAAGAGAACATGCAACAACCAGGGGGCCCCTCCACCATTGGCCAGGCTGTCGAGTGGGTGATCAACAATATCCTGCTCAAAGCCTCAAAGCAAAGGAGACCGCGGGTCATTTTTACAGTTATTGGAGGGGAGACAAGTCATTGGGACCAATCCAAACTGAACCACATATCACTACTAGCCAAGTGTCAGGGTATTGTTCTTTTCACCCTTTCAACAGGAAATGGGTTCAATGACACACAATTGGAAGAGACTGCAAGTTTTCCCCTAGAACAACATCTGCTATTCATGGATCAAGTCAgacacagtgaaataaaatatgcacAACAGTTCACAAAAGCATTCTTCAGAGCTCTGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU155044 lncRNA upstream 122245 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA upstream 129146 17137413 ~ 17141435 (+) True G123659
TU155013 lncRNA upstream 284677 16980793 ~ 16985904 (+) False AMCG00002496
TU154926 lncRNA upstream 477782 16792100 ~ 16792799 (+) True G123568
TU154877 lncRNA upstream 615697 16653499 ~ 16654884 (+) True G123526
TU155212 lncRNA downstream 423408 17695860 ~ 17760195 (+) True G123797
TU155224 lncRNA downstream 654247 17926699 ~ 17940633 (+) True G123808
TU155257 lncRNA downstream 778560 18051012 ~ 18052338 (+) True G123833
TU155357 lncRNA downstream 1232436 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA downstream 1234452 18506904 ~ 18509774 (+) False G123916
AMCG00002513 mRNA upstream 21829 17204463 ~ 17248752 (+) True AMCG00002513
AMCG00002506 mRNA upstream 134061 17107399 ~ 17136520 (+) True AMCG00002506
AMCG00002507 mRNA upstream 168462 17095736 ~ 17102119 (+) True AMCG00002507
AMCG00002501 mRNA upstream 254335 17003048 ~ 17016246 (+) True AMCG00002501
AMCG00002502 mRNA upstream 277626 16987102 ~ 16992955 (+) True AMCG00002502
AMCG00002517 mRNA downstream 12619 17285071 ~ 17291512 (+) True AMCG00002517
AMCG00002511 mRNA downstream 50183 17322635 ~ 17353428 (+) True AMCG00002511
AMCG00002528 mRNA downstream 117493 17389945 ~ 17415896 (+) True AMCG00002528
AMCG00002529 mRNA downstream 173468 17445920 ~ 17471292 (+) True AMCG00002529
AMCG00002526 mRNA downstream 380023 17652475 ~ 17661173 (+) True AMCG00002526
TU154987 other upstream 310499 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 4140884 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 4208896 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 5130116 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 5434412 11835439 ~ 11836169 (+) True G122582
TU155222 other downstream 642984 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 1559562 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 1857951 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 3001637 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 5795672 23068124 ~ 23180043 (+) True AMCG00002623

Expression Profile