RNA id: AMCG00002518


Basic Information

Item Value
RNA id AMCG00002518
length 3006
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00002518
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17416137 ~ 17423894 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTTCCCTGAAGAATCCAAAGCAGACACTATGGGGGTTCAAGGATTTACAAGTTATGTGGAAGAAAACCAGCAGTTCTTTAATGACctaaaattaagaaataccAAAATTATAATTGACGGAAGCAGTTTGTACTTTCGCCTTTATTTTACTTCAGGCCTTGACCAACAGCATGGAGGAGATTACGATTCATTTGCCGATCTGGTGCAGCAGTTTTTCGAAGCATTGTCGGCATGCAATATAAGTCCCTTCGTGGTTTTAGATGGTGGAATCGATTCCTCAGACAAAAAATTTGCAACCCTAAAGGAGCGAATGCAGAAGAGAATAAGAGATGCAAATGCCCTGTCAAGGGGGTGTAATGGCTCTGTCTTACCCCTTATCACCAAGCAAGTCTTCAAACAGGTGCTGTCCAGACTCAAAGTGCCATACGTCCAGTGCATGTCAGAGGCAGACTTGGAAATAGCTTGTTTAGCCAACCAGTGGGACTGTCCGGTATTGACAATGGACAGTGACTTTTGCATCTTTGACCTGAAGAAGGGCTATTGTCCCCTTGTGGATTTCCAGTGGAACAACGTGAGCAGGTACACAGGCACTGCAGAGAAATACATCCCCGCACGGTGCTTCTCAATTGATAAATTATGCTCCCACTTTGGCAACATGAGCAAAGAGCTCGTTCCTCTGTTTGCAGTAATCATTGGTAATGATTACATCAATCTTCAAGCCATGGAGACCTTCTTTAGCCAAGTGAGATTCCCAGTGGGCAGCCACCCCTTGAGCAGTAGGACACACATCCGCATCGATGGCCTTCTCAACTGGTTGTCGCAATTTGCAGGACCAGAAGAAGCCATTGAAATGGTGGTGAAGTATATTAGTGACAGCCAAAAAGACGAAGTCCAGCAGCTGCTCTCTTCTTCCATGAAGGAATATAAACTCTCTGACAGCAACCTGGCAGATTACTTCACGGATGGAGCACCAGTGTCAAATGTTCCAAAAGTAATTGGGTTTCTGCCTCCCTGGATGCTCACAGCTTTGGGGAAAGGCCAGCTTGCCTCGTTTGTTATCGACGTGCTGGTCTTAGAAAGAGCACTGATGCATATTCAGGTGGAGGACTTCCGACTTCCCAGCAGCAACATGTGCTCTCTGCCAATCCGTCAGGTTATATACGGAttgcttttaaatggaaaaataaacctgTTGCCAAAGGAGATTACCGATGACTGGCACAAAGTTTCTAAACACAGgtgtaacattttcaaagtggAGGAATTTGACAGGTACAATTTAGACTTGAAAAGGACTGTAATTCAAGCCATTCTTCCGAGCTCACCAGAACAGTGTTTACTGCAGAAAATCCCAGAGGTGCCTTTACCAGTGCGTCTCCAGATATTCCTCGAGACGCTGGGAGTGAAACGCTCCATTGTTCACTCTGTTCCTCACCACCtcagtctgcctgtgtgtgtcacttgTTACTGGTTGACTCACTCAAATCCCAAGCCCACCCTGCAGTATCTCCAGGCGCTGGTGTTGGGCATGGTCAAAGCAGTGCGGGAACAACTATGCAGACTGCGGGTGTGGAGGAATGACCGACAGGGCCTCAATGTCGGGGCGGCCCACCTCTACAGCCAGTGGCAGGCCTCTTTACAGATTACCAACATCTTAAACCGACTCCTCTGCTGTCCCCTGCCAGAGCCAGACTGCTCATGGCTTTACAGTGGCACATTTGTGCACAGAGTGGTCCGGGAGCTGAATAGTGGAGTCTATCCTGAATCCCTGCTGTGTGGCTCCATTCTGCCTGGCCAGCTCTACAGGGATCTCATGGGTGCAGCACACTCTGCTGTCGCCCCAGATTTCTTCTCTAGCAAGAAAAAGCAGAGAAATAAGAAGCCAGATAAGCAGCAACAGAGAGAGGCTGAGAAGAGAAGGGTCAGCGAGACACCGAAGGCCCAGCCCTGTCACGACATCAACAACAGGTTTTCAGTCTTGGAACTGGAAGATGAGGACTGAATAGGAAGATCGTTTTATGAGTTTTTGcgctccaaaaaaaaaaatatttcagaatctTGGaatctttaatcttttattagattttttccaGCATGGGTTTTTCCACATGCACTTTTTTCTATAATTGAATGcaagaaagtattttttatatacattttataagggGTACGTGTCTTTTCTAATAATCTGTAATTAAGGAAACAAATTCCTGGTTGTGAACACTTGTCATCTGTTGTCATGTTTTCTTAAAGATAGATAAAACCAGAACAAAAAAGTGTACATTGCATTATAGATACATCTCCACATTTTACAGTTgcgatttaaaaaatgcaacaaaactcaaatcttattattatatactttatttttaggtGCAGGTAAAATTGCTCTTCAATTACCTCTCTCTTATGTGGATcattcatttatctttttaaatacagttaattTATTCTTCAACTTCACCTGTATTGTGCACAACAGGTCACTGTCAAGATGACGAGAGAATTATATGttcaaagtaaaaagtaattatgaaatatgtgcatcaaatcaaaagacaaatGTCAACCAGTAATTTCAATATggtttttaataataactaacTTATGCCTTTGCTTCTTCAGAGAACTGAACtggcatttaaaatgcatgggGGTAAATGATGCCAAGATTAATTCTGCAACATTAATTGTTTGTCAGTTAGAttgataaaaatgttttccccaTTTTAGATCATtcaacttttaattaatttcaaactcTTAAGAATCTCAACTTTAGTTATTTTTGGCATAGTTTACAAACATGAAACCTCAACTGGTACATCTACTGGTAGAAATGTTGAGAATTAAATTTGCAATTCATACAACAATCATACATCTGAAAGAATAAtctaagaatgtattttttttttaaacacttaattGTATGTACGTGACTCAATCATTTCTACTACCAAAATGtcttttatactgtatttatttagaatgtGCAATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155101 lncRNA downstream 177593 17234370 ~ 17238544 (-) True G123705
TU155036 lncRNA downstream 340588 17075312 ~ 17075549 (-) True G123646
TU155030 lncRNA downstream 366081 16995129 ~ 17050056 (-) True G123642
TU155025 lncRNA downstream 433491 16980831 ~ 16982646 (-) True G123637
TU154999 lncRNA downstream 456030 16958162 ~ 16960107 (-) False AMCG00002503
TU155202 lncRNA upstream 236173 17660067 ~ 17675110 (-) True G123788
TU155213 lncRNA upstream 266144 17690038 ~ 17696504 (-) False AMCG00002524
TU155242 lncRNA upstream 387624 17811518 ~ 17815466 (-) True G123824
TU155254 lncRNA upstream 509570 17933464 ~ 17994763 (-) True AMCG00002533
TU155273 lncRNA upstream 627203 18051097 ~ 18052332 (-) True G123845
AMCG00002515 mRNA downstream 44175 17354650 ~ 17371962 (-) True AMCG00002515
AMCG00002516 mRNA downstream 107581 17307266 ~ 17308556 (-) True AMCG00002516
AMCG00002514 mRNA downstream 230229 17183401 ~ 17185908 (-) True AMCG00002514
AMCG00002510 mRNA downstream 258114 17137176 ~ 17158023 (-) True AMCG00002510
AMCG00002509 mRNA downstream 319054 17092906 ~ 17097083 (-) True AMCG00002509
AMCG00002519 mRNA upstream 95111 17519005 ~ 17530234 (-) True AMCG00002519
AMCG00002522 mRNA upstream 120946 17544840 ~ 17553514 (-) True AMCG00002522
AMCG00002521 mRNA upstream 134934 17558828 ~ 17572989 (-) True AMCG00002521
AMCG00002520 mRNA upstream 174755 17598649 ~ 17606949 (-) True AMCG00002520
AMCG00002523 mRNA upstream 254128 17678022 ~ 17685297 (-) True AMCG00002523
TU154950 other downstream 576415 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 2469826 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 3761901 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 4386731 13028197 ~ 13029406 (-) False G122862
TU155250 other upstream 498558 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 5662100 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 5758027 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 6837671 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 6867893 24291787 ~ 24339566 (-) True G124848

Expression Profile