RNA id: AMCG00002524


Basic Information

Item Value
RNA id AMCG00002524
length 1907
RNA type mRNA
GC content 0.37
exon number 6
gene id AMCG00002524
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17690008 ~ 17706289 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTTCAGAATTTCAGACCGGCTGCTAACCACAAGCCAACCCCCTCACTCCAGCCCCGAGACGTGTCTGTCTGTTGTCGAATGTTTCACAGGAGAAGACAAGCGGGTTGATGCCGTGAAGATGGAGGAGAGCCCCGGGTCTCAAACAGtcatcaccaccaccagcaGTAGCAGCTCCTACTCGGATCACTTCTCCACCTCCACCCTGGCATACGACAAGCACTTCCTCAGGACTGTGCCTGGCATCCTCATATTGGCAGAAATCGTCCTCGGTCTAATGGTATGGACCCTAATAGCTGGGACAGAATATTTCCGTGTTTCTGCGTTTGGCTTGGTGATGTTCGTGGCGGTGTTTTACTGGGTGCTGACTGTCTTCTTCCTGATCATCTACCTGACGATGGCTTATACCAGGATTACTCATGTGCCATGGGCCACAGTGGGTTTGTGCTTCAATAGCAGTGCTTTCCTCCTGTATTTCGTGGCCGCTGTGGTAGATGCAGTGTCAGTGAGACAGGCAGGCCATCGCAAGCATGACTTTAGCAGTTGGGCTGCATCATCGtTCTTCGCCTTCATGGTATCACTGTGCTACGCAGGAAATGCGTATTTTAGTTATAAGTCTTGGAGATCAAGGGATGAAGGAAACTGACAGTCTGGAATAAGATGAAGGAACCTAAGCATCCAAAGACAGCTGAAGGAGAAATTTGGAGTCAGATATTTTCTTCCACCAAGTTGAAGGAagccatttttaaacaataacttGGATTAAGGTGAAAACTTTTCCTGAAGCTGTCTAGACACTACTAACAAGCCTTTTTCATCAACAGGTCTTTTGAAGACAGGAGTTGAAACagttgcagattttttttttttttatgtttttgtaacatTGACAAGTGTTGAAAGGTAAAACAAAGACTATGAGaccattttttttcataaggaagttttatttttaaacttgaaattgtatttatattgtttttgtttttattttactaagaGTATAATGTTTCCTCCCCTTTCAATTTCTTCCTTCTCTTATAATGTGAGCATGGCCATcctgtaatttaattacaaattacaacgaatatgaaaaacaaaatgctgtatatattttaaatgttctgaagtatttctgtttttatgttttgttctgttttttacaaCAGAAACATAAATGTTCAGGGAAATTCTCAGTTGacgaaaaaaataatacaacattagCCTTAATCACCTACATTTGTAAATGGATTtcttgaaatacatatttatttattttgattgttcaATGAAGTGATAAATACAAGTACATTTGATAAATCACTGAAGGATATTATACAAAGTTTTATCCTAAAATAGGGATTATATTATTAGTGGAAAAACTGAATAATCTATTGAAGTGGCTGCTCCCTTCTGAAAAATAGAATTACATGAAGAAGGTTTTACTTTTCAAATAGTTTTCTAAGAGCCTTTTTATGTAATATTGATATGTATGGTTATATATCTACACAGTATTATGTAGCAGGGATGTACCATCAGGAAAATGTGAGTTTTATTAACTCACTAGTGttgctctaaaaaaaaaaaaaaaaaagtaaacacaagGTGGTGCAGTTTTCCTCAAGTCTTTCAAGAAATTGAGCAaggattttgtttaaatatttacttgTACATTAGTTTCTCAAATGAAAATATAGACTGacattgttaaagaaatgtagCTTTAGCACCCAACATTATAATAACAGTTTTTCACCTGTTATGTTCCTTAATTAATACCATCTTTGGTTTCATTTAGAAAAGCAATATAATGCCTACGACACATTAAGTGCAACAGAggatatatgtttttgttcttacTGCAAACATTTAATGTCAGAATAAACCTCCATGTTTGCTGCCACA

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155202 lncRNA downstream 14898 17660067 ~ 17675110 (-) True G123788
TU155101 lncRNA downstream 451464 17234370 ~ 17238544 (-) True G123705
TU155036 lncRNA downstream 614459 17075312 ~ 17075549 (-) True G123646
TU155030 lncRNA downstream 639952 16995129 ~ 17050056 (-) True G123642
TU155025 lncRNA downstream 707362 16980831 ~ 16982646 (-) True G123637
TU155242 lncRNA upstream 105229 17811518 ~ 17815466 (-) True G123824
TU155254 lncRNA upstream 227175 17933464 ~ 17994763 (-) True AMCG00002533
TU155273 lncRNA upstream 344808 18051097 ~ 18052332 (-) True G123845
TU155304 lncRNA upstream 499379 18205668 ~ 18206132 (-) True G123876
TU155370 lncRNA upstream 762945 18469234 ~ 18469607 (-) True G123926
AMCG00002523 mRNA downstream 4711 17678022 ~ 17685297 (-) True AMCG00002523
AMCG00002520 mRNA downstream 83059 17598649 ~ 17606949 (-) True AMCG00002520
AMCG00002521 mRNA downstream 117019 17558828 ~ 17572989 (-) True AMCG00002521
AMCG00002522 mRNA downstream 136494 17544840 ~ 17553514 (-) True AMCG00002522
AMCG00002519 mRNA downstream 159774 17519005 ~ 17530234 (-) True AMCG00002519
AMCG00002530 mRNA upstream 132290 17838579 ~ 17857068 (-) True AMCG00002530
AMCG00002531 mRNA upstream 169716 17876005 ~ 17902810 (-) True AMCG00002531
AMCG00002533 mRNA upstream 285772 17992061 ~ 18041573 (-) False AMCG00002533
AMCG00002532 mRNA upstream 352243 18058532 ~ 18062065 (-) True AMCG00002532
AMCG00002536 mRNA upstream 465842 18172131 ~ 18182627 (-) True AMCG00002536
TU154950 other downstream 850286 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 2743697 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4035772 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 4660602 13028197 ~ 13029406 (-) False G122862
TU155250 other upstream 216163 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 5379705 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 5475632 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 6555276 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 6585498 24291787 ~ 24339566 (-) True G124848

Expression Profile