RNA id: AMCG00002526


Basic Information

Item Value
RNA id AMCG00002526
length 2290
RNA type mRNA
GC content 0.42
exon number 12
gene id AMCG00002526
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17652475 ~ 17661173 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAAAGATGGCCGCTGCGGGGaggtctgtctctgtgtccagtAACTCCAATGCAAATACCAGCACCTTGGAAATGCACAACGGCGATGATGATGACGGACAGAACCTGTGGTCCTCTATTTTGAGTGAGGTTTCCACGCACTCTCGGTCAAAATTGCCATCAGGGAAAAATGTCCTGGTTATGGGTGAAGATGGGGCTGGTAAAACCACTTTGGTAGCCAAGCTCCAGAATATAGAAGAATATATGAAAGGGAGAGGACTGGAATACTTATACTTCAATGTGCACGATGATGACATTGATGTGGTGAGACATTTCCAGGAGTATACAGAGCCAGGAACTGAGATCACCGCATCTCCACAGAGAAGAAACCCATCTGTGGCTGACGGTGATGAGGAGAGCATCGTTTTGCCTCTGGGCGAGAATACACTTACACACAACCTCGGTGTTCCTGTTGTAGTAGTTTGCACAAAGTGCGATGCCATCAGTACCTTGGAAAAAGAACACGACTACAGAGATGAGCACCTCGACTTCATTCAGTTACATATCCGACGGTTTTGCTTACAGTATGGTGCAACACTTCTATACACttcaatgaaagaaaataaaaatcttgatttattatataaatacctTGTCCATAGATTATATGGATTCCCTTTCAACTTACCAGCTCAAGTTGTGGAAAAAGATGCAGTATTTATTCCAGCAGGATGGGACAATGAAAAAAAGATTGCAATCCTACACGAAAATTTTCAGTCTGTAAAAGCAGAGGACAACTTTGAAGATGTTATAGTTAAGCCACCTGTAAGAAAGttCGTACACGAAAAAGAAATTGTAGCAGAAGATGATCAAGTGTTTCTCGTAAAGCTGCAGtctCTACTATCAAAACAGCCTCCAGTTGCTGCTGGAAGACCAGTGGATGCTTCCAACAGAGGTCCTGGGGGTTCCCCTAGAACACCCAACCGCTCCGGATCAACAAACGTGGCCAACGTAATGCCAATTCCAGCAGGTACCAAGAAAATAGATCCCAATATGAAAGgaatTGTAGCTGGAACTACAAGTGAGGGTGTCTTAGCAAACTTCTTCAACAGCCTGCTGAGCAAGAAGACTGGCTCCCCGGGTACTGGGGGCAACAGTGCAGCAGGGAGTGGGGGTAGTATGCCTGGATCTGCAAAGAAATCAGGGCAAAAGCATGGCTTAACAGATGTGCAGGCAGAACTGGATCGGATTTCAAGTAGATCAGAAATGGAAGCATCATCCCCAACTACCCCGACATCTCCAGTAGACGGTGAAGAATCCTGAAGACGATATCAGAAGCCCTTTCATCATCCCACCCCAGTCTGCCtctcccctttttttttttttttggtgtgaatcacagagcaaaacaaaaacaaaaaaacaaagacttcATGTTTACAGGACTGGTGGACCTTTCCGTACTTGGTTCTTTACTGTTTGGTCCGTAAGGGAATTCTGAAAAGGTCACAGAATGGCTACACAGAAGGAACGGGGTATGGACGTCTCGCTAAACATGAGCACTGGTGGGACGGCTCCTACATCTGGTTTACATTGTTTACTTTGGTTGTTAGAATAAAGCTGATGGTTAGCTAATTTTGTCTTCTTTTGCTGCCTGTTTGGAAATGTCCAAATTAGGATCAGATCTACTTTTATCCCTTGAAAGACCAGTGTAAAGTTTTAGCTCAGGATGGATGGACTTGGAAATGCATGTCCAGGTGACCATAAAGCAGCAACTGGAATAAATTAACCAGGAAAGAAAAGGGAACATCAAACCTCAAGGCATACttttaaagattacatttaaaatctgaaataagcataatgcaatttacaaaccTGGTCTTTAAGGGGTCATTGTAGGACAAGAATTACAATGTTGTGTCCAGACACTGGAAAAGCTATAATGCACCTGAAAAGGCTTAAAATGCCCCTTTGTTGTGCGTAACATGCGCATCTGAGGTTGTTTATCTAATAACATGCAATATAATTGAAGGATGCACTACATACGTGGATTTTATTTTGGCCAGTTTATCTTGGAAACTAATCTTTTAGATTAATGGCACTGAAGTGGCAAATAGGTTGCATTGTTTGTACAACTAGAGATCCTATAGTTGCTGCGTAAGGACAGAAGGAAAAGGCAGTGGTGTGTCTCACTTGAAGAATGTACAGTTCTCAAGCTGGAAGATGGTTGGTCCTGTAATTTCAGATATTGTAGTGATGTTTCTATTGATCAGGTCTGTAATCActtaataaaactatttattctGAG

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005868 cytoplasmic dynein complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function

KEGG:

id description
K10416 DYNC1LI, DNCLI; dynein light intermediate chain 1, cytosolic

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155044 lncRNA upstream 504139 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA upstream 511040 17137413 ~ 17141435 (+) True G123659
TU155013 lncRNA upstream 666571 16980793 ~ 16985904 (+) False AMCG00002496
TU154926 lncRNA upstream 859676 16792100 ~ 16792799 (+) True G123568
TU154877 lncRNA upstream 997591 16653499 ~ 16654884 (+) True G123526
TU155212 lncRNA downstream 34687 17695860 ~ 17760195 (+) True G123797
TU155224 lncRNA downstream 265526 17926699 ~ 17940633 (+) True G123808
TU155257 lncRNA downstream 389839 18051012 ~ 18052338 (+) True G123833
TU155357 lncRNA downstream 843715 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA downstream 845731 18506904 ~ 18509774 (+) False G123916
AMCG00002529 mRNA upstream 181183 17445920 ~ 17471292 (+) True AMCG00002529
AMCG00002528 mRNA upstream 236579 17389945 ~ 17415896 (+) True AMCG00002528
AMCG00002511 mRNA upstream 299047 17322635 ~ 17353428 (+) True AMCG00002511
AMCG00002517 mRNA upstream 360963 17285071 ~ 17291512 (+) True AMCG00002517
AMCG00002512 mRNA upstream 380023 17270581 ~ 17272452 (+) True AMCG00002512
AMCG00002525 mRNA downstream 706 17661879 ~ 17675110 (+) True AMCG00002525
AMCG00002527 mRNA downstream 145562 17806735 ~ 17811727 (+) True AMCG00002527
AMCG00002535 mRNA downstream 336873 17998046 ~ 18050916 (+) True AMCG00002535
AMCG00002534 mRNA downstream 484039 18145212 ~ 18161564 (+) True AMCG00002534
AMCG00002540 mRNA downstream 676583 18337756 ~ 18346198 (+) True AMCG00002540
TU154987 other upstream 692393 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 4522778 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 4590790 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 5512010 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 5816306 11835439 ~ 11836169 (+) True G122582
TU155222 other downstream 254263 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 1170841 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 1469230 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 2612916 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 5406951 23068124 ~ 23180043 (+) True AMCG00002623

Expression Profile