RNA id: AMCG00002528


Basic Information

Item Value
RNA id AMCG00002528
length 4113
RNA type mRNA
GC content 0.43
exon number 26
gene id AMCG00002528
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17389945 ~ 17415896 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCTTTTCAGAAGGGGTAAAGGAAGTTATCTACACTGTGTGGCAGCTTGTCGAACATCTATCCAAGTGTGAAGATGAGACAATGGTTCCGGTACTAGCATCAAAAAAGGCCAGTGAGCTACCGGTGAATGAAGTAGCTTGCATTTTACAGGCTGACTTGCAGTATGGTTTGAATCACGGGGAGGTGACACGTCGTCGTGCATACCATGGCTGGAATGAGTTTGACATCAGTGAAGAAGAACCGTTatggaagaaatacatttctcagtttaaaaaccCCCTGATAATGCTTCTGCTGGCCTCCGCAGTCATCAGTGTGTTAATGCACCAGTTTGACGATGCTGTCAGCATCACTGTGGCCATCATCATTGTTGTTACAGTTGCCTTTGTACAGGAGTACCGTTCTGAAAAGTCCCTTGAAGAACTGGGCAAGTTAGTGCCTCCTGAGTGCCACTGTGTACGGGAAGGAAACCTGGAGCACCTGCTGGCCAGAGAGCTGGTTCCTGGAGACACAGTCTGCTTGTCAGTGGGAGAGAGGGTTCCTGCTGACCTGCGTCTCTTTGAGGGCATTGTTATTGGAACTGGAGAAAATTCAGAATTTGGTGAAGTTTTCAAAATGATGCAAGCTGAAGAAGCTCCAAAAACACCTTTGCAAAAAAGCATGGATCTGTTAGGCAAACAGCTCTCCCTCTATTCATTTGGGATTATAGGGGTCATTATGCTGGTTGGTTGGCTACAAGGAAAGCATATTCTTGATATGTTTACTATTGGAGTTAGCCTTGCAGTCGCTGCTATTCCTGAAGGGCTGCCCATCGTGGTGACGGTGACACTGGCTCTGGGTGTGATGAGAATGGTGAAGAAGAGAGCGATTGTGAAAAAGCTCCCAATTGTGGAAACCCTGGGCTGCTGCAATGTAATTTGCTCAGACAAGACCGGAACCCTGACGAAGAACGAGATGACAGTCACTCATTTATTCACCTCTGATGGACTCCATGCTGAGGTTACGGGAGTCGGGTACAATAATGCTGGAGAAGTTATACTAGATGGAGAAGTGATCCATGGATTTTCCAATTCGTCCATAAGTAAAATAGTAGAAGCCGGATGTGTTTGCAATGATGCCGTCATTAGAAATAACACTCTAATGGGCCGCCCGACGGAAGGAGCTTTGATTGCTCTCGCCATGAAGATGGGCTTAGAAAGTGTTCAGCAGGAGTATATCAGACGGGAGGAGCACCCGTTCACCTCTGAACAGAAGTGGATGGCTGTCAAGTGTGTTCATCGGACTCAGCAGGACAAACCTGGGGTTTATTTCATGAAAGGTGCCTATGAACTCCTAATACGATGCTGTACTACTTATAACAGCAAGGGCCTGGCGCTGCCCATAACCCAGCAGCAGAGGGAGCTCTACCAGCAGCAGAAGATGTACATGGGCACCGCAGGACTGAGAGTGCTGGCCTTCGCTTCTGGCTCTGAGATGGGCCAGCTGACATTCCTGGGGTTGGTGGGAATTATCGACCCTCCCAGGACAGGCGTGAAAGAGGCGGTGGGGGCGCTCATCAGCTCGGGAGTGGCCATCAAGATGATCACTGGAGATTCCCAGGAAACGGCCGTTTCCATTGCCAGCCGATTGGGTTTGTACTCCAAAGggtctcagtctctctctgggGAAGAGGCCGACCAAATGGATATTCAGCAGCTGTCTCGCGTAGTTCCTAGGATAGCAGTGTTCTACAGAGCGAGCCCCAGACACAAACTAAAGATTGTGAAGTCTTTGCAGAACATTGGGGCTGTGGTGGCCATGACAGGAGATGGAGTCAATGATGCCGTGGCCCTCAAGGCAGCCGATATAGGAGTCGCAATGGGACAGACCGGCACCGATGTTTGCAAGGAAGCAGCCGATATGATTCTAGTGGATGATGACTTCCAGACAATCATGTCTGCCATTGAAGAAGGAAAAGGAATTTACAATAACATCAAGAACTTTGTACGATTTCAGCTCAGCACgaGTATAGCAGCACTGACTTTAATTTCCTTGGCTACGCTAATGAATTTTCCTAATCCCTTAAACGCAATGCAGATTTTGTGGATTAATATTATAATGGATGGACCTCCAGCTCAAAGTTTGGGAGTAGAACCCGTTGATAAAGATGTGATCCGAAAGCCTCCGAGAAATGTGAAAGACAGCATTATCACCCGGAGTCTGATTGTAAAGATTTTAGTGTCCTCATTCATCATTGTCTGTGGAACTCTCTTCGTCTTCTGGAGAGAGCTGCGGGACAACGTGATCACCCCCAGGGACACAACAATGACCTTCACCTGCTTTGTGTTCTTTGACATGTTCAACGCACTGAGCTCCAGGTCACAGACCAGATTTGTCCATGAGATGGGCTTGTGCAGTAACAAGATGTTTTGTTATGCCGTTCTTGGATCCATAATGGGACAGCTGCTTGTCATTTACTTCCCACCACTACAGAAAGTGTTCCAGACGGAGAGCCTCAGCATATTTGatttgattttcttaattGGACTAACCTCCTCAGTACTCTTTGTGTCTGAGGCCATAAAGAAGATCGAGAGAGGTCGAGAGCGGAATCAGAAACCTGAAGCCTTTTTCCATGAAGTATGATGCATATTGTGTCTGTGGTAAAGGAACAGGCGGCGTCTGTGAAGTAAATGGACAGGAAGTTGAGTCTAGAGGGTTTGGCAGCAAGCTCTTTTTCCATTGAATCAgtttatttaactttgtttgtggttttccaACCATGAATCTACAGGGAAGGCACTAGCTACACTACAAAAACTGTAGTGGCGACACATTTCCCGTTAAGATTTTGTCTGCTGCTTCAAGTTAAAACTGGACCTTTCAGCGAATCTGAAAGAccttatttataacattatgtTCACGTAGCCAGTTgagattttgattaatttttaaggtttttattCTTTCAGCACAGgtgttggattttgttttgtggaacAGTATGGATGTTACTTTCAGGCATTCCAGTTGATCTTGCTAAATGGATCAAGGTCCCCATATTGTCActatagtgtttatttattttacaaaacagggaggaaaaaataaaaaataaactggtgGATTTCTTTTATGCTACCgttttgtatacatattttggaGGAGGTGACCACtattaaatcatgtattttgtgGATGACGAGCTTTTATAAAATGGAACATCATCTGTGTGTCTTTATATCGAGTAAGTGTGATCAAGTATGATTTGGTGTTGGATGAAATCGGTGTATACAAGTATTCTTGCTGCATGGCCAAGTGCTGGATTTGTACGTGTACCAGATtctgttcgtttttttttttttttttttaagggtagAGCAAAGTAAATTCATCTGGTATTGAAAGCTCAGAaattatcaatttctcagtcactttaattaattgatatcaGCTTTGTTCTGTTTGGTGATTACTACCAAGCCTTGTATTTTAAGTCGAAGCGAGGAACTTCAGCccgtatttaattttttttttaatccttaaGAGTTGAAAAAGACGAATGAACAGATGATAGAGAAGGTTCTCGAATGTACATAACTTTAATGCTGTAACACCATTAATACCTTTTATACCCATCTGATCGATGTCCAATTGCACTgttgatatacatttttatatagtttctCTCTTGgcaaaggacatttttttttaatatatattgcagatgattttaattttgctatATTCTTTGACATAATGGGCGttaaatttatttaaagtttaaatgagTGAAGTGGACATGTCGTGTTCCCCTGGAAATTAAAAAGCCTGAAAATTTTTTGGTACAAAACCTGCTGTTGTCTAGCAAAAGCAGTTGTCTTTGTGTTTGGACAGCTCCTggtccaactttttttttttctttctttttctttcaaatgttgtccaaatatatacatttttctcccCTGCTGTTTTCAGTTCCATTCACACATGTCAAACAAGTACAGCCTTCATTTGTGCTGCTTTGCTTTTCAAAGAGGTAAAACCAATGAGGTCTGACTGTGCTGTTGTTTCTCGTGTGCACAGCTGACACCATTATTCTGTTGACACCGTTTTAAAATAATCCTG

Function

GO: NA

KEGG:

id description
K01537 ATP2C; P-type Ca2+ transporter type 2C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155044 lncRNA upstream 241609 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA upstream 248510 17137413 ~ 17141435 (+) True G123659
TU155013 lncRNA upstream 404041 16980793 ~ 16985904 (+) False AMCG00002496
TU154926 lncRNA upstream 597146 16792100 ~ 16792799 (+) True G123568
TU154877 lncRNA upstream 735061 16653499 ~ 16654884 (+) True G123526
TU155212 lncRNA downstream 279964 17695860 ~ 17760195 (+) True G123797
TU155224 lncRNA downstream 510803 17926699 ~ 17940633 (+) True G123808
TU155257 lncRNA downstream 635116 18051012 ~ 18052338 (+) True G123833
TU155357 lncRNA downstream 1088992 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA downstream 1091008 18506904 ~ 18509774 (+) False G123916
AMCG00002511 mRNA upstream 36517 17322635 ~ 17353428 (+) True AMCG00002511
AMCG00002517 mRNA upstream 98433 17285071 ~ 17291512 (+) True AMCG00002517
AMCG00002512 mRNA upstream 117493 17270581 ~ 17272452 (+) True AMCG00002512
AMCG00002513 mRNA upstream 141193 17204463 ~ 17248752 (+) True AMCG00002513
AMCG00002506 mRNA upstream 253425 17107399 ~ 17136520 (+) True AMCG00002506
AMCG00002529 mRNA downstream 30024 17445920 ~ 17471292 (+) True AMCG00002529
AMCG00002526 mRNA downstream 236579 17652475 ~ 17661173 (+) True AMCG00002526
AMCG00002525 mRNA downstream 245983 17661879 ~ 17675110 (+) True AMCG00002525
AMCG00002527 mRNA downstream 390839 17806735 ~ 17811727 (+) True AMCG00002527
AMCG00002535 mRNA downstream 582150 17998046 ~ 18050916 (+) True AMCG00002535
TU154987 other upstream 429863 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 4260248 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 4328260 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 5249480 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 5553776 11835439 ~ 11836169 (+) True G122582
TU155222 other downstream 499540 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 1416118 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 1714507 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 2858193 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 5652228 23068124 ~ 23180043 (+) True AMCG00002623

Expression Profile