RNA id: AMCG00002530


Basic Information

Item Value
RNA id AMCG00002530
length 678
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00002530
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17838579 ~ 17857068 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACATCAGGACAATATGCTTGGTGGTACAATGCAGAATTCAATGGCACTTCTGAATAACCTGGTTGAGGATAAAGAGACTAATCTTCAGCTGCTGTATGAGGAAGGTTTGGTAGACGTTATCTGCAATGTTTTCACTAAGACCGCAATCCTGTTCCTTGAGAAGGAAGATAAGCAAAGCATGAAGAATGGACACAATCTCCTGCTCTCATTACTGGATGTTTTACACAGTATGCTGAGACATACTTCCAACGTAGTACGAGTGGCATTGCAGGCTCAGAAATCGGACACAGGAGGGGACAACCAGGCCGCAGAGGACCTTCTGCTCACCAATAAACCTCTGACGGACTTAATTAGTCTGCTTATTCAGCTGCTGCCAAGCAATGACCTTGAGGTATATGAGGGTGTGATACCATGCCTCTCTTTATTAGTTCAGCTGTACGGAGGGGACAACCCTGACAGCATGTCCCCAGAAAGCATTCACAGCTTCACAGAGGCACTGAACTCACAGCAGGACCCGAAACAACAGAAGCTGCTGCTCAGGGTTATTAGGCGTTTGCACTGCTTGGTGATTTGTCTCCCCGATTTCACAGGAAAAtccaataacaacaacaacaacaacaacaacaataataatccagCTGTCTTCTCTAATGACTGTCAGTACTGTGTGCATTAA

Function

GO: NA

KEGG:

id description
ko00640 Propanoate metabolism
ko00071 Fatty acid degradation
ko00280 Valine, leucine and isoleucine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155242 lncRNA downstream 23113 17811518 ~ 17815466 (-) True G123824
TU155213 lncRNA downstream 142075 17690038 ~ 17696504 (-) False AMCG00002524
TU155202 lncRNA downstream 163469 17660067 ~ 17675110 (-) True G123788
TU155101 lncRNA downstream 600035 17234370 ~ 17238544 (-) True G123705
TU155036 lncRNA downstream 763030 17075312 ~ 17075549 (-) True G123646
TU155254 lncRNA upstream 76396 17933464 ~ 17994763 (-) True AMCG00002533
TU155273 lncRNA upstream 194029 18051097 ~ 18052332 (-) True G123845
TU155304 lncRNA upstream 348600 18205668 ~ 18206132 (-) True G123876
TU155370 lncRNA upstream 612166 18469234 ~ 18469607 (-) True G123926
TU155412 lncRNA upstream 727641 18584709 ~ 18585930 (-) True G123961
AMCG00002524 mRNA downstream 132290 17690008 ~ 17706289 (-) True AMCG00002524
AMCG00002523 mRNA downstream 153282 17678022 ~ 17685297 (-) True AMCG00002523
AMCG00002520 mRNA downstream 231630 17598649 ~ 17606949 (-) True AMCG00002520
AMCG00002521 mRNA downstream 265590 17558828 ~ 17572989 (-) True AMCG00002521
AMCG00002522 mRNA downstream 285065 17544840 ~ 17553514 (-) True AMCG00002522
AMCG00002531 mRNA upstream 18937 17876005 ~ 17902810 (-) True AMCG00002531
AMCG00002533 mRNA upstream 134993 17992061 ~ 18041573 (-) False AMCG00002533
AMCG00002532 mRNA upstream 201464 18058532 ~ 18062065 (-) True AMCG00002532
AMCG00002536 mRNA upstream 315063 18172131 ~ 18182627 (-) True AMCG00002536
AMCG00002539 mRNA upstream 346309 18203377 ~ 18204483 (-) True AMCG00002539
TU154950 other downstream 998857 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 2892268 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4184343 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 4809173 13028197 ~ 13029406 (-) False G122862
TU155250 other upstream 65384 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 5228926 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 5324853 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 6404497 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 6434719 24291787 ~ 24339566 (-) True G124848

Expression Profile