RNA id: AMCG00002533


Basic Information

Item Value
RNA id AMCG00002533
length 1566
RNA type mRNA
GC content 0.56
exon number 12
gene id AMCG00002533
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17933464 ~ 18041573 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCTGGCTGTCGCGGAAATAGAAGGAGTATTGAGTGGAGAGGTTACCAGACTTGTGGTGCATGAGGGACCAGATGGAGTCAAAGAGGAGGAGGGCGAGGGGCCGGGGCCCTTTGCGGTCACCTTCGAGGGGCTTGACGATCTGCAGCTTCTCGGGCAGGTAGGAGCGGCTGCTGAAGGAGAAGTACGACAGGCCGGAGTGGTGCGTGCCCAGGGACATGATGCTGTCGGTGGGCGTGCGGCTGCCGCTGTAGATCTCGCCCTTCTCGGCCAGGTCTCGCAGCTTCCTCTCGCGGTCCTCCTCGAAGAAGCGCCGCTCGCTCAGGTAGTTCTCGCGGCGCAGGGACAGCCGGCGCAGGGCCATCTCCAGAGGCTGGAGCGGGGCGTGCTCATGCAGCTGGAGAGAGCCGAGTTGAGGGATGAGGACTGGTTGGAGCCCGGGATGTTCATGGGAGAGGGAGCCAGGGACCTCTGCTTCACTATCGACAATCTGAGACAGCAGACTCTAGCACCACGAAAAGCTACAAAAGAGAAGCACATGAGAAGAATGCTCCCCTGCCGCCTTAGTGATCAATATTCCCAGCATCACCTGCTGCAGTGTTGCATCAGCGTGGAGGCGCGCGACCATGGGACAGCTGCTCAACATCTGTGTGCCGTGTACACTTATGGTGAGGTCGATATTGGCATCGGGAGAAATGAGCGGGGGTGCAAAAGGAAAAATCTGGTTGCCGTGGAAACTAGAAGGAATGACTGCAATCCTGACGTCAGCCAGAAAGCACAGGGCTGCCTCACTTACATACTGCTCTTCCCCGGAGCCCGGTCCGCAGGCTGGCAGTGGCTCAATGCTTGGAGCAGAAGGGGGCAGGGTGGTGGCCGAGGTGTTGTGGTGCAAAGCTGTGGCGTCCAGCTTGGCAGCTTTCACAGGGAAGCCCAATGTGCCATGAGCGGGGCCAGTGCCGGAGATGGAGGCAGGCAGGCCGTGGGGCAGCCCTGGATCTCTGGCACTGCGGACTGGCTCCTCTCACCttatGACAGGGAGTGGTGTAGCTCTGTACTGCAGGATTTTCACAGCCTGCCTGCCGCTACAGTGCAGTGCATGTTGatcacCAAGAGAATATCAAGACTTTGCCACAAGATCAAGACTGGTTCAGCTTACAAAACCAGTGCAAACCctataaaacaaactgtggTGGGCAGTGACGTCATGCACAGTGcagcagagggacagagagagagagagagagagagaggggactaTGGCGAAATAAGCGTGCAGTGGAATCGACCGGCTTCTCATTACAAGCAGCTCTATACCAGGCGCATCTGCGGTATGGAAAACTTCTTTCTATATGAAGAAATCGGAAGAGGGAGCAAGTCAGTTGTGTACAAGGGGAGAAAGAAGGGAACAATACACTTCGTAGCAATCGTCTGCAGTGACAAATCCAAGAAGGCAGAGCTAACAAACCATGTACGCCTTACCAATGATATAGCACATGAgaatattgtttcctttcatgaGTGGTATGAGACCAGCAACCACCTTTGGCTGGTGGTTGAGTTGTGTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155242 lncRNA downstream 176595 17811518 ~ 17815466 (-) True G123824
TU155213 lncRNA downstream 295557 17690038 ~ 17696504 (-) False AMCG00002524
TU155202 lncRNA downstream 316951 17660067 ~ 17675110 (-) True G123788
TU155101 lncRNA downstream 753517 17234370 ~ 17238544 (-) True G123705
TU155036 lncRNA downstream 916512 17075312 ~ 17075549 (-) True G123646
TU155273 lncRNA upstream 9524 18051097 ~ 18052332 (-) True G123845
TU155304 lncRNA upstream 164095 18205668 ~ 18206132 (-) True G123876
TU155370 lncRNA upstream 427661 18469234 ~ 18469607 (-) True G123926
TU155412 lncRNA upstream 543136 18584709 ~ 18585930 (-) True G123961
TU155446 lncRNA upstream 740572 18782145 ~ 18782366 (-) True G123981
AMCG00002531 mRNA downstream 89251 17876005 ~ 17902810 (-) True AMCG00002531
AMCG00002530 mRNA downstream 134993 17838579 ~ 17857068 (-) True AMCG00002530
AMCG00002524 mRNA downstream 285772 17690008 ~ 17706289 (-) True AMCG00002524
AMCG00002523 mRNA downstream 306764 17678022 ~ 17685297 (-) True AMCG00002523
AMCG00002520 mRNA downstream 385112 17598649 ~ 17606949 (-) True AMCG00002520
AMCG00002532 mRNA upstream 16959 18058532 ~ 18062065 (-) True AMCG00002532
AMCG00002536 mRNA upstream 130558 18172131 ~ 18182627 (-) True AMCG00002536
AMCG00002539 mRNA upstream 161804 18203377 ~ 18204483 (-) True AMCG00002539
AMCG00002537 mRNA upstream 174222 18215795 ~ 18224850 (-) True AMCG00002537
AMCG00002538 mRNA upstream 185395 18226968 ~ 18241221 (-) True AMCG00002538
TU155250 other downstream 2596 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 1152339 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 3045750 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4337825 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 4962655 13028197 ~ 13029406 (-) False G122862
TU156333 other upstream 5044421 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 5140348 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 6219992 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 6250214 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 8262309 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile