RNA id: TU155254


Basic Information

Item Value
RNA id TU155254
length 1602
lncRNA type sense_over
GC content 0.43
exon number 2
gene id AMCG00002533
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17933464 ~ 18041573 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taTGGCGAAATAAGCGTGCAGTGGAATCGACCGGCTTCTCATTACAAGCAGCTCTATACCAGGCGCATCTGCGGTCAGGAGGACATCGCAAGGAGTGTTTGAAAGCCGTGTTGCCCTCGTCTCTCTCTGCCCTCGACACACTGCTGTGTCCACACGGGTCAGTCCGCCGTCGTGGAGGCGCGTCGGGTTGCGTTGCGTTGCGTTGCTGCTCCATATACAGGATCCCGGCTCCTGTCGTGTGCAAAGTTTCCCCCGTAAACCTTGTGCACTGGACTCTATTACACCGCATGTGCAACCATTTTCACAGCTGCAGTGTCGGCTCTGTGGAACTGCTAGCTTTGGGCTGCAGTGAGGCGGTGTATCACTATACACTTACAGCTGAGGGGGTGAAAGACAGGAAACCTTGCCTTGTCAGGACAGCGTTATCAGTGCACGATCTGGGGAGAACAAAATACAACTGAAACAATACGGCAAGTCGCAGGAGCGGTTTACGACGGTGGAAATCGGCATCATTGGGAGGATTTCCCTTCATCAGCAGGACCTCGATTGATTTGGTAACCAGGCAACTGAGCAATTCTCCGTTCGCCAGAGGAGACGAGTGCTATAGCAGGAGCTCTGTGGGGATAAAGAAGGGGCACATTTCTCTTCAATACAGTTGTGCGTTTCAGTCTTATTCAAATATCCTGCCACAACAAGGTCACAGATGTTCAGAGCACTTTGAAATGATTGTCATTAACGAATGGCTAATTCAGTGATAAACAGTCCATTGCTTTTTAATCATAACACTGCCTGTTGTGGCTGAAGCATgcccaaattattattaaaatcattaaaaaaataaacagttgaaTTCCAAATTGAATGGTTTAATTATTCTTATGATTCTGTTTACAGAATGCTAGATGGAACAGAATGCTAGACTAAAACTGCCTGAACAGTCTGTTGatcttagttttatttatttatttataaaggtCAAGTGTCAtccataaaacatacaaaaagaaaaaacataaccaATTCAGATCAGTGACACACACTGTACTTCCTAGATGATCCGACAGCATGCAATGAAGCCCCTACAAGGCTATTTATCTATACAGCCCCTTCCCACAATTTAAATCCAATACTGTGCAAGTCCATATGAGATTCTGACCAGAAGGGAGCTTATTAGAGATCAAGACAAAAAGGACCCGCCGTTTCATTAACCACATCACCAGCCCAGACTGAATCGATTAACCCCCCTTTTTATTGTACAATCAATAGAGATCCTTCCTTCAGTTCCCTCAGGATCTCAGTCATATTTCTCTTGAGTGTCCCACTGAACTAGATTTGACTGTGTAATGATATTCAATTATATACCTATTTTCTACCTCAGCAAAATCTTCTTATTGATTAACTAAATAATAACTAATTTCATCTGggtagtttttttaaatctaaaaaaaaaagttacttgAAGGAACTACGAAGATGTATAGTCAGGGCTTTGTAAGAAATCTAGAAACAAGACATGACTCTGCAACCTCAACACTGAAGAGACTGAGAAGAAACCCCAGATATAAATCACTGACCTTTCTGTCTGATATTGAAGAGCACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155242 lncRNA downstream 117998 17811518 ~ 17815466 (-) True G123824
TU155213 lncRNA downstream 236960 17690038 ~ 17696504 (-) False AMCG00002524
TU155202 lncRNA downstream 258354 17660067 ~ 17675110 (-) True G123788
TU155101 lncRNA downstream 694920 17234370 ~ 17238544 (-) True G123705
TU155036 lncRNA downstream 857915 17075312 ~ 17075549 (-) True G123646
TU155273 lncRNA upstream 56334 18051097 ~ 18052332 (-) True G123845
TU155304 lncRNA upstream 210905 18205668 ~ 18206132 (-) True G123876
TU155370 lncRNA upstream 474471 18469234 ~ 18469607 (-) True G123926
TU155412 lncRNA upstream 589946 18584709 ~ 18585930 (-) True G123961
TU155446 lncRNA upstream 787382 18782145 ~ 18782366 (-) True G123981
AMCG00002531 mRNA downstream 30654 17876005 ~ 17902810 (-) True AMCG00002531
AMCG00002530 mRNA downstream 76396 17838579 ~ 17857068 (-) True AMCG00002530
AMCG00002524 mRNA downstream 227175 17690008 ~ 17706289 (-) True AMCG00002524
AMCG00002523 mRNA downstream 248167 17678022 ~ 17685297 (-) True AMCG00002523
AMCG00002520 mRNA downstream 326515 17598649 ~ 17606949 (-) True AMCG00002520
AMCG00002532 mRNA upstream 63769 18058532 ~ 18062065 (-) True AMCG00002532
AMCG00002536 mRNA upstream 177368 18172131 ~ 18182627 (-) True AMCG00002536
AMCG00002539 mRNA upstream 208614 18203377 ~ 18204483 (-) True AMCG00002539
AMCG00002537 mRNA upstream 221032 18215795 ~ 18224850 (-) True AMCG00002537
AMCG00002538 mRNA upstream 232205 18226968 ~ 18241221 (-) True AMCG00002538
TU154950 other downstream 1093742 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 2987153 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4279228 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 4904058 13028197 ~ 13029406 (-) False G122862
TU156333 other upstream 5091231 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 5187158 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 6266802 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 6297024 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 8309119 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile