RNA id: AMCG00002534


Basic Information

Item Value
RNA id AMCG00002534
length 4151
RNA type mRNA
GC content 0.43
exon number 17
gene id AMCG00002534
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18145212 ~ 18161564 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgacagAACAAGGAACTGAGCCAAAGCACGAGAACAATTCATCCTCTTCTGGAATTTCAGATCAGGAAAAGGAACTAGCAGTCAATGCTTTTCAAGCTTTCTCGTCTGGAAATTATGATGACTCTCTGAAGCACCTTGACAATCTGCAAGAGCTGAACAAGGATGACTACAAGATTGCTATGAACAAGGCCATCGCTGAATTTTACAAAAGCAGTCAGACCACAACAGACACCTTAAAGCAAACACTTGCTGCTATGAAAAACCAGgTTCATGCTGCAGTAGAAGAAATGGATGGCCTGGATGATGTTGAAAACAGCCTTCTTTACTACAATCAAGCCATTATACACTACCACATGCGGCAGTACTCTGAAGCGATTGCAATTGGAGAAAAGCTTTATCAGTTTCTGGAACCTTTTGAAGAGAAGTTTGCTCAGGCCGTTTGCTTCTTGCTGGTGGACCTGTATCTACTGACATTCCAGCCAGAAAAAGCTCTGCATCTGCTTGCTGTCCTGGAGAAACTTGCAGTCCAAGGAAACAACAAGAATGGCAAAGCTGAGtaTAAAGTAAGAGCctatattcaaatgaaatccTTGAAGGCCTGTAAAAGGGAGATCAAGTCGGTCATGAACACAGCTGGAAATTCTGCCCCCTCCCTTTTCCTCAAGAGTAATTTTGAATATCTGAGGGGTAACTACCGGAAAGCAGTCAAACTTTTAAACAGCTCCAACATCGCAGAACACCCTGGAGTTATGAAAACTgGTGAATGTGTCCGTTGTATGTTTTGGAACAATCTTGGCTGCATACATTTTGCAATGGGAAAGCATAATCTTGGAATTTTCTACTTCAAAAAGGCCCTGCAGGAAAATGATCACACATGTGCACAGTTAGCTTTGAACAGCAATGGGCAAGCTAAGAAGTTATCTGGCATTCCTATGTGTACCCTTCTCGCAAACAAACGCTACGAGCTGCTGTACAACTGCGGGATCCAGCTGTTGCACATAGGGAGGCCTCTGGCAGCCTTTGAGTGTCTGATTGAAGCTGTCCAGGTGTACCACTCAAACCCTCGATTGTGGCTCAGACTGGCAGAGTGCTGCATAGCGGCCAACAAGGGGAATTCAGAACAAGAGACCAAGGGCCTTCCAAGCAAAAAGGGCATTGTACAGTCGATTGTTGGGCAAGGGTATCACCGCAAGATCATTCTTGCTTCACAGTCTACACAGAATGCTGTTTACAGCGATGGTCAGTCTGCAGCAATTCCTGTGGCCAGTATGGAGTTTGCAGCGATTTGCCTGAGGAACGCTCTGCTTCTCTTACCTGAACACCAACAGGAAGTGAAGTCAGAGAATGGCTCTAAGAGTTCCAGCCAGTCAGGAAGTGTGGAGAGCAGCAGTGAGAGCATTGAAGCGTGCAGTAAAGGCCAGGAAGGAGACAAGTTCATTCCGGCTGCTCCTTCCTCCCCTTTGAGAAAACAAGAGCTTGAAAACCTCAGGTGCTCCATCCTGGCCTGCAGTGCGTACGTCGCTCTGGCGCTGGGCGATAACCTGATGGCGCTCAATCATGCCGAGAAACTTCTGCAGCAGGCCAAGTTGTCAGGATCCCTGAaATTCCTGGGCCACTTGTATGCGGCCGAGGCGCTCATCTCCTTGGACAGGATCTCGGACGCTATCGCTCACTTGAACCCTGAAAATGTGACTGACGTGTCTCTGGGGATCTCTTCAAACGAGCAGGATCAAGGGTCTGACAAAGGGGAAAACGAGCCAGTAGAATCCTCAGGAAAACAGACTCCGCTTTGTTACCCCAATTCTGTTAACTCAGCCAGAGCAATGATGCTGTTCAATTTGGGCAGCGCTTACTGTCTGAGAAGTGAATACGAGAAAGCCCGTAAATGTCTCCATCAGGCCGCATCCATGGTTCACACAAAGGAGATCCCTCCAGAAGCTATACTCCTGGCTGTGTACCTTGAGCTACAGAATGGAAACACACAGCTGGCCCTGCAGATCATTAAGAGGAACCAACTCCTTCCCTCGGTTAAGACCCCGTCGCCCGACGTGCGGAAGAAGCCGGCCACCTTTCAGCCCGTCCAGCCCATCCAGCCCATCCAGATGCCAGCCTTCACTACAGTCCAGCGCAAGTGAGAAGACACCGCCCAGCAGTCTGCCCTGCTCGTAAACAAGCCAATTTGGTTGAAATTATTCATCGCCAGAACCTTCTTCCCCAAACTTTAAATTATAACAACCCATCCCATTCTGAATAATTGTCATTTACGTTCTATAACGGAGACCCTTCCATTACCATGGCGAACTTAATCTCAGTTTATCGACATCACGAGCCTCGAGTGTTTATCGACGTCATGATGTCAGCAATTAACATTCCATTCTCAACCGCCATCCCCAATGcctgttttcttttatcttttgttACAATTTGGAAAATCAGGGCATCTGCTGGAAGAATTTGTAACCTTTGACCCTTTTGGGGCgcatgaaataaacacacaaaaatttTTTTACTCAGCCTACACCGCATGCTTTTTTTCATAACCATGCTCAAAACACACTGGAATCATATTCAAATCTTGGCACTTAAAATAGTTGTATGTGATACAAGGAAGGATTAATTTTACCAATACAGATATACCCCTGCTTTGCACAGATTAGTTAGTTGCATACAATAGATGCCATAGCTGTTTAAATCATGTTCATTTATGTTCACTAATTTAACAACAAAATTACTAAAATCCGCAGTGAACCAAAAATCTGTTCATTATTTagttccaaaaaacaaaacattaaaaatcccAGCATTTACAAAACCTAATCACCAttaattcagtgtattttaGAATACATTTCTCATGCAAAGTATTGTATACCTGTATTGAAGTGATGTGTGTTCATGTGGTCTTCAAGTCTACATGAGGCTCTTCTGTCAAGTGTGACCACAATGCACTACCTGAACCAGTGCGGTGCTCTGTGCAGGATTTCAGCTCACTCTAATGGTTCCATCACTACAAAAAACTCCATTCGATATTTATCTTTCTCCGTACAGAGGTATTCTGTagaaaagcaaataattacTTCACTGAATCTTCATTAAAGTTTCTGTCACTTACTGTTGTGTTGCGTCTTCTACGGTTTGGAGCTGTTTTGATGACTCGTCATCATAGATTAGGGGAGAGCCATAGCCAGAAGGTTTTGGGACCACCTCGGTTTGTGATTTCTAACAGATGTTTAAGGCAAAGGTGATCACATTTCTAAAAATCTGAACAAGGCAGTTAAAAAGgtgttaaacataaaaaaagccCTTAAAATGCTCAgatcattttaataaagttgCCCCTGACACAATCTGTTTTCTGGTGCAGATTGAACTCTAGTGATCTTGAACAATTGGTTTGGTGATCTGATTGAGGACACATGGTTACAAAGAAACTCATTAAATGCTTTATGATCTTTAAATTGTGAACATAAAAAAGGTGGGTTTTGTGTGAGGTCGTAGAACTTGTTTAATACAATATGTATAACTTTCTACTCTGAACAAAACCAgacaactccctcctggcttaCCAGAACTACATGGGTAAAGGAGACTGAGGCCAGTTTTCAACCTCTTATTCCATGAGCCACTATATTTTTAAGTAGATTGAGATGAGGTAGAAAAATCTTGGGTTAGTCCTTTTCAATGCCTCTGTATCCAAGGTAGTTGATGAGCAGCTACTGTGAAGAGGTGAGGCATGGGTATTGGCATGTTAGCTTGTCCCCCTGTACCATTATCTCCACCATTCTGCATCGCAAGCACAGGGCAGAGCCCAGACGGTGCTGACAAGGTCCTCTGTGCATGTTCACACCACTGATTACTGTTGTTTCAGTTGAATTTCATTATgcagtgaaataaatcaaatgcagaCTCCAAATGTCTCGCTAGGTACTGTGACTAAAGGGATTAGTGGTTTAATGTAGAGTTCACATTCATGCCACTGGACTCCCAATGGCAATTAGCACCACAGCAATCCAAATTGAGCTCTTtgcatgaaacaaataaaacaccacCAATGTCttgatctttaaaataaattttgcaaaatttaaataaatgtttgtgtatcTTTATTTAATGGCCATTTATCTGAAATGAGATGTGATTTAATGGG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0005634 nucleus cellular_component
GO:0030014 CCR4-NOT complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12607 CNOT10; CCR4-NOT transcription complex subunit 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155257 lncRNA upstream 92874 18051012 ~ 18052338 (+) True G123833
TU155224 lncRNA upstream 204579 17926699 ~ 17940633 (+) True G123808
TU155212 lncRNA upstream 385017 17695860 ~ 17760195 (+) True G123797
TU155044 lncRNA upstream 996876 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA upstream 1003777 17137413 ~ 17141435 (+) True G123659
TU155357 lncRNA downstream 343324 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA downstream 345340 18506904 ~ 18509774 (+) False G123916
TU155389 lncRNA downstream 392921 18554485 ~ 18556562 (+) True G123943
TU155399 lncRNA downstream 422605 18584169 ~ 18586027 (+) True G123950
TU155463 lncRNA downstream 682804 18844368 ~ 18861644 (+) True G123993
AMCG00002535 mRNA upstream 94296 17998046 ~ 18050916 (+) True AMCG00002535
AMCG00002527 mRNA upstream 333485 17806735 ~ 17811727 (+) True AMCG00002527
AMCG00002525 mRNA upstream 470102 17661879 ~ 17675110 (+) True AMCG00002525
AMCG00002526 mRNA upstream 484039 17652475 ~ 17661173 (+) True AMCG00002526
AMCG00002529 mRNA upstream 673920 17445920 ~ 17471292 (+) True AMCG00002529
AMCG00002540 mRNA downstream 176192 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002546 mRNA downstream 295487 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002553 mRNA downstream 638296 18799860 ~ 18810379 (+) True AMCG00002553
AMCG00002562 mRNA downstream 912129 19073693 ~ 19127947 (+) True AMCG00002562
AMCG00002561 mRNA downstream 968503 19130067 ~ 19133567 (+) True AMCG00002561
TU155222 other upstream 160482 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 1185130 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 5015515 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 5083527 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 6004747 12133786 ~ 12140465 (+) True G122746
TU155458 other downstream 670450 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 968839 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 2112525 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 4906560 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 4991084 23152648 ~ 23290535 (+) True G124689

Expression Profile