RNA id: AMCG00002537


Basic Information

Item Value
RNA id AMCG00002537
length 3314
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00002537
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18215795 ~ 18224850 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGTAGGTTACGTTGGAAGTAGCCGATGGTATTTGCGTCGCAGTTTTGCTGCTGCATGTCTTGCAGTGTAATccgttgttgtgtttgtttagaccgtagacacaaacaaacacatagaaACATCTCGACGTTCCGCAAACACATCTAGTGTAATGTCACACTTCCTGTAATGATGATTGGTCTGTGATTTTGTGCAGTCGTGTGTATACTTGTGCAGTCCAGTATAGACCCATCTCGTTGGCTTTCAAGGGGTTCAGCTATTTTTACTGTCCACTCCCATTTCTAGGCCACAATGCAACAGCTGAGGAGAGCGCACAACAAAGACCACTGttgtttgattgcttttttGAGAAGAAACCCTACACCCGTGGATGTCCAGATTTAGACGCTGTGTGTGATGTCTGTGACCTGCTTCTTGCGACATGTGGCAAGGGTCACTTCAAACAGTCATATTGCTGTGCAGGTCTTCCAGAATCGATTGCTGTCAGGGGCAGATGCAGTCAATGCGTTGCGACCCTTCTACTTTGCAGTGCATCCAGATTTCTTTGGCCAGCACCCAAGGGAAAGGGAGGTGAATGAAAACTCGCTCAAGAGGCTGAATGGATATATAGAAAACCTTCAGAAGCCAAACTTACAGCACCTCAAACCAACCCAGCTTACATTTTATGTCAGAGAAACAGTGAATGAAAAGCATGGTGTTAAACCTGAAGTTCTTCCTTCAGGGTTTCGGGCCGTCAGCTTCACGTTGCAGTCGAGGGATATTCGAAGCACGGTACTGGATGTTCTCACGTCCTGCAGCTTACCAACAGAGCACATGCAGGCCTTGAGTGCCAGCGTTGACTCGCCCAAGCAGACGCATGTGGCCGGAGAGCCATTCTACAGACCCATCCGATGGGACAAGACTTATTACTCGTTCACCGGATTCAGGGACCCTGAGGAGGATCTGGAGAAGGCCAAGAGAGTGGAAAATACGCTGAGCTCCTGGTTGAGCAGTAATGAAGCCAGTGCCACAAAGAAGCAGAAGGACAGCCTACCCCACCGTGCTGAACTGAAGAgattgaaaaaaatgctgtgccACAAACTGAGGCTTGCAGACATAAGGTGGCAGCGTAGCTGGGGTATTGCTCACCGGTGTAGCCAGTTACACAGTCTGAGCCGTCTGCATCAGCAGAACCCAGAATCACTTCTCAATGTTGAAGGGCATACAATAATATTCACTGACCAATCAGGAATGAATGCTGCTGGTCATGTGATGTTGGGAACAACAGATGTTCATCATCAGTGGGCCAAACTCCTGGGGGGGATACAGGTGATCCACATCGAGAGACTGCAGCCCCTGCTAACGATAGAGGAGTACTTCAATACCTTGAGCGCCTTTCAGAAGAGGCTCTCGTCCTGCTGGGTCCCCTTCCACCCCCGGAGCCTGCAGGGACTACAGATGACCCTGGAGAACGACCGCTCCAGCCCCCGCCTGCACGAGCTGGGCCACTTCATCATCCCCTCGGCCTGCGAGCCCACGACCCTGCAGTGGTTCATTCAGACCAAAGCACCGGAGGCCCGGCGCAGGATGAAGAGAAGAGACGAGCTAGAAGCAGAGGAAAATGACCTGGTGCTGTACTGCTTGGAGAGTCTGTCCTTGAAACGGTTGTACAAGGAGCCCAGCGTGAGCAGCAAGCAGATGATACCCTGCTGCCGGAGGCTGATGGAGGAACGCTGCCCCTACGTGCAGGGGATGCGTCTCTGTGTCTCGCATTTCTACTCTGTCCTGCAGGATGGGGACCTCTGTATTCCCTGGGACTGGAAGAGCTGAGGAGGTCGACTGGGTCAGCGGCTGACATATTGTAGGACAGCTTCACAGTAGGGAAGGAGGAAGCTGGGGAAACTATaaagcactttattattttatgattagaGGCAGAAAAAAGTATAGGACCACAAGTTTTAGCTTCATAAGATatgcaaacaaaaatctatataCTATCTAAGAAGAAAACCATAGAAGCATACGtactatacatatgtatatatgttttttgtacagCACAATGatatattaaagtattattaactattaactGGGGGCAGCCAATTCTGCTAGGTGTTTCTATAGcttcaatataaatgttatgtatGTTACTTCTTAGATGGAACGTTTTATGCAGTATTTACAATCAAGTGGCAGaccatatttcagttttttgtagaaaatgtaatttgaaatcaatatgtaataaaaacagtgaTATGATCTATTTGCTTAAGATCTGCGTGAATTCTAAATTCTGCGAGTGTTCAGAGGTGTTCGGTTTTAGTGCAACATTATTGAAGGCACTGTTCATGCCAAAGACAAAGTCACAGGATCCGAGGATCAGAGTGGGTTTTACTGTTTGGTGCAGTGTTTGTGGATTTGTTCTCTTGGTTTTCTTGTCCATTTCCCGGACGATAATTATATTCTTTCCAGTTTTGTAGCTTTGGATAAACAATCCTCCTTGCTTAGCAGCGTGTCATAAACTGATAACAatttttgaagaaaatatatgaataatttagtttaaatttgAAAGCACTCGTTAAGACCTCACTAGGGGGAGCTGTTCCCATACCCATAGAGTGCtcttgtatgtaaaaataaatgggtGATATTCAATCTTCTTCGTTTATAGGCCATCCCTCATAAATAGTATCAGTGACACTATATGAGTGAAGTCATCCTATCCTGTGTGCATGTCTCTGAAAGTAATACccgttttgtttatttactgtcTTTTATAACTGTCAGTGTGTTAGCAGTATAAGGTGTTACTGCTTTTCCCTTAAATGAATGACAGCTCATTTCACTGTGGGACTTCCTCTTGCATTTTGTTATGCATTTAGAACCAGCGCACTAAAATTGAAACTGGTAGGTGTAAAGTGTCTCAAAAACTTCCTGAGAAACAGGAAATCTTATACATAATGTCAACGCACACATGAAAGGTTATATTTAACAGTCACAACATTGCTGAGTTTAAAAGCTGTGGGAGAGCCCTCTGAAGGGGTTTATCTTGTTTTGTACCTTTGTTGAGAGCATCAGTCAAGCTTTGTATTGGAACCAAGATACAATCGATGGATCAGGTGTGTTTTAGAACAATTATCCCGATGTTTTGGCCAATAACTAATGGTCAAGCCAAGCATCGTTTTTCCGTAGGAATTATAATAGGGTACATGACCTACTAATCTTATTTACTGTGTGACTGTTTATAACCTCATAATTTAACGTACCGATCaaagaataatcaaaatgtttgGAAGCTGTATCAATAAAGCTATGTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155304 lncRNA downstream 9663 18205668 ~ 18206132 (-) True G123876
TU155273 lncRNA downstream 163463 18051097 ~ 18052332 (-) True G123845
TU155254 lncRNA downstream 221032 17933464 ~ 17994763 (-) True AMCG00002533
TU155242 lncRNA downstream 400329 17811518 ~ 17815466 (-) True G123824
TU155213 lncRNA downstream 519291 17690038 ~ 17696504 (-) False AMCG00002524
TU155370 lncRNA upstream 244384 18469234 ~ 18469607 (-) True G123926
TU155412 lncRNA upstream 359859 18584709 ~ 18585930 (-) True G123961
TU155446 lncRNA upstream 557295 18782145 ~ 18782366 (-) True G123981
TU155557 lncRNA upstream 1059028 19283878 ~ 19284293 (-) True G124068
TU155687 lncRNA upstream 2077222 20302072 ~ 20334454 (-) True G124175
AMCG00002539 mRNA downstream 11312 18203377 ~ 18204483 (-) True AMCG00002539
AMCG00002536 mRNA downstream 33168 18172131 ~ 18182627 (-) True AMCG00002536
AMCG00002532 mRNA downstream 153730 18058532 ~ 18062065 (-) True AMCG00002532
AMCG00002533 mRNA downstream 174222 17992061 ~ 18041573 (-) False AMCG00002533
AMCG00002531 mRNA downstream 312985 17876005 ~ 17902810 (-) True AMCG00002531
AMCG00002538 mRNA upstream 2118 18226968 ~ 18241221 (-) True AMCG00002538
AMCG00002542 mRNA upstream 95289 18320139 ~ 18335125 (-) True AMCG00002542
AMCG00002541 mRNA upstream 158970 18383820 ~ 18389641 (-) True AMCG00002541
AMCG00002543 mRNA upstream 201874 18426724 ~ 18427338 (-) True AMCG00002543
AMCG00002544 mRNA upstream 257883 18482733 ~ 18492180 (-) True AMCG00002544
TU155250 other downstream 226330 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 1376073 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 3269484 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4561559 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 5186389 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 4861144 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 4957071 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 6036715 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 6066937 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 8079032 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile