RNA id: AMCG00002538


Basic Information

Item Value
RNA id AMCG00002538
length 3948
RNA type mRNA
GC content 0.43
exon number 15
gene id AMCG00002538
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18226968 ~ 18241221 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAGGAAACGCTGCATCTTCTGTCACTAAGCCAAAGCATCAGGCCAAGATACCATCCTCGGGAGAGTTGCATGACAAAAGACTGATCAAAAGCCCCTGTTGTAGGACTTGCAGTGTACCAAAATATGTGACTCCTAGGATTAATACACCAGGGAGAGGGCCTTCTCTGAAAATCAAAGCTGAATCGAAAGGCTTGAAGATTAAGCAGAAGTCAGTTGTGACCCCTCAAGAAGAAATCAAGAAATCATCACAGAGCAAAGCCTTTGGGATAGAAAAATATCCCATCCTAAAGCTGTGTGATATAGTCAAAGGGTCTAACATCCCTATTGATGTCACTAGTTATAAGTGTGTTTTGCCcgttgaactgaaaacaaaaaacattaagtgTTTCAAAATAGAAGGCAGGGATTTAATATGCTTAAAAACTGAGGCTCAATCTACCCCATGCTCTGTGTATAGCAATGCCCTGAAAAAAAACTCCCTTGTCCCACGTACAAGAACACAGGAAATACCAGAAATGGTAAATGGGGTTCTTTCAGAAAGTCGCTTTAAAACCTATGACATACCGACCCAGAGTGATACTGGAGTTGCTGTCtgtgagaaacaaaatgtaaaaaaaacaaatttgtccTGTGGAAGAACCATAAAGCCAATTGGTCCTCTTGGTATAAATGATGAAAAAGATTTAGAGAAATCAAGTGGCACATTAGAGACTGCAACCCCTGCACCTGTACTGACAGCCTTTAAGATAGAAACCTTGTCTCTTCTTCGTGAGATACAAGTGAAAGATGCTTTGTCGAATTTAGCAGAGAATTTGCAGAGCTGCGTCACAGATGATGGAGTCAAAAGCAAAGGAGACCTAGAAATGAGCATTTTGGGGAATCTTCATGCTGCGCAGAACACTGCTTCAACTGAGAATTGTACAGTTGACACCAAGCCTGCAGACACGGGAGGTGCCTTTAACAGACAGCAATCATATAGTTGCCAGAGAACTACACCATATGTAATACACACTTCCATTTCGTGTGCACGTGCCTATCTTCCGTGGCCCTTTGTTAAATGTGAGTCTTCTGAAGTAGATTGCCATTTGACATGCACACAGGTGTTGCCTTCTGAAGACAGTGAGTTATCAggtaagaaaactgaaaatctcAATTTGTCAGTCAGCTCACCAATACTAAATGGATCCAGTGAAACTGAAAATTCCTTGCATCCTAGTATAGAATGCAAAGAAGAAGTTTTCACAGAAGATTCAAGTTCTTCCAATGCATCCGATTCAGACATGCAACCCCAAACGACAGAGGAGAGTGTTGTGCAAGATTCAGGGTCTTTGTTGGTTACACCTGTAAAGCAAGAGGGCGTGCCCACGATTTGCAGCCTTGCAATAGTCAATAGTCCTGACAAAGTCAAAAAAGAGAGGATCCTACAGGGTTGTGGCCTTGGTGAAAAGGCACATTTATCAGCTTGCGAAGATGGCAAGAGCTTTTCGGAAACACAACCACACAGGATGTCTTTAAAGAGATGCAGTTCTGCAGAGCTGGAAGAAGGTGACACAAACACCTGTCCAGTGAAGCGCTCTCTTACTATTGAACCTGAGACTTCTGAACTGTGCACAGTGGAAACAAAATCTTTTAATCCTGTTTCACCCTGTCATCCGGAGAAACTGCCTAGTGCAAGCCAGCAGGTGAAAATACCAAGGACATCTTTGACTTTCACTGAATACCTTTCATCTTGTCAGGATGCATCTAGTGCTGATGTAAGTAGCTCCTCTTCTGAAGACGACGATGGCTTGGCAGCGTTTGCTGCTGACTTCACTGCTGAGATCATGTGTGAAATAGAGGATGGTTGCTCAAGTAGCAATCAAAGGGTTTTGCATCACGCGTCAAGCACCAGCGACGGAGAGGCATCTGGTGATGTCATGGATGTGGTCAAGGCATACGAACAGGATGCCATCGTTCTCGATGTGATCCAGGATGACCCCGATTTGTTTGGGAACCTTGGAGAAGTCACCGAGTCAGTAGGAAAACCCAGCTGCACCACGAAAAGGCTGAAGAAGTGTGGGCACAGTCCTGTAAAAACTTCAAGGACCGTGTCTAATTGTAAGATTTCATTAGATGGCAGCGTAAgGGCTTGGCAGAACACACatcaggagaagaaaacaaatgtcttctTAGAACAAGATTGCAAGACTGGTAGTAAACAGACTGAAGATTCCTCGCAACAAGGCAAGCCCTGGAGTATTACAAGGAGACTTGGTTTAtgCAGCAAACCTGTAGAGCGCATTGAACACCAACAGATGTACTGCAGGTTTTACTTCAGTCCCCTCCTTGTCTGTACCCGGCCAGCATGCCGCTTTTTGCATGTACCCATAAGTGGAGATGAAAAGTATTGCATGGAAGTTGTTCAGCAGTTCATGAAGATTTTGAATCCATCTTATTTGCAACGTGCAGCTGCAGTGTTTACAAATTACTACCAAAGCTCCCGACCTggaatttatttcaaatgtcaaatCCTGCATTCCCTTCTGTCAACACTGTTGAAGAGAGGTCATTTGAGAGATTTATTTGCTGTGCTTCGAATCACAGCAATGTACAAAACTTTGtgtGTAGAAGCAGGCCTAGAATTCACTGTGGAAAACTTTGACTATATGCAACATCAGCTGAATCGTCTTCAAGTATCAAAACAGGAGCTAGAACTCTTTCTGGCTATGAAATCAAGAACAGTAAGGAGAGAAGCATGGAAAACAGGACAGTTTGATCTAGACACGGCAGTTGCTGAAATAGAGCATTATAAAGAGCAGGAAGACTGGGCAAAGATTGGAGCAATGTTCAACAGTATGTGTCTCTCCAATGGCAGTCTTGACAGTCTAAACCGGTTCTGCGCTTGCATTGCATCCGTGCTTCTGAAAGACATCCACAGCACCCCGTCGGTTCCTTTCTGTAAATTTATAGAAACGGtttcccAAGAAAACCATATAAATGGGTTGGATAAAAGTTTACTTGGAAGGATTGGAATTTCGGTGATGTTTGGATActacaaaacacagcagtggGCAAAGGGGCGTAAGTTATTGGATGCCTTGACTGGGATGAAGATCAACTTCTCTACACTTAAAGGACTCTTTGGGAATGAATGCCATGCCTCCAGATGCCAAATTGTGAATACTGCTACAGAAATCTTCCTCAAAAGTGGAAGTGTAGAGAAAGCAATGAACATATTGAAAGATACTGAGTGGATGATCAGCTCTCCAATGTGGCCTTGTGAGAGCATTGACGTTGTGAATCGCCATAATTTGCTGTGTAAAATCGCTGAACAAACATCTCAGAAGAACATGTATGTGGAAACTCTCGAAGTTCTGACGAAGCTGCCTGGGCTACACGATGTCCACTGCAGTTTTGATGTTACCAGATATGATGACATTTTCAACCGACATTTATGGTCCTGCTTTAAGTACCAGAATTTAAGAGTGTGTTGCAGTATTGTGGAGTTCATGGTTTCAAAGAATATCTCTGTGGATTTCTGCCTTCTCAGGAAGTTAATCCACAAACTTGGACAACAATGTCTTTGGCCCAAAGCCAGATCTCtctacaaatGTGCTCTCTCCCTGGGCTGTTACCCTCCTTTTCAAGGAAACATGTACTGCAGACTCCTTTCTGTCCCCTGTTCCCTGTCTGAGATTGAGATGACGCTGGCCTTAgaagtctttattttttcaaatgcgCATGACATTAAGAATCCAAGCACCTCCGCGCTTCAAATTGTACTGAAAAGGAATGAAGACCGTGCACTGATAAGTGAAACTGACTACCATGCAGCGGTGAACAGACTCCTGTCTGCTGCTCAGATTACCAGTCCGAAACTGGTGATTAAATACGCTACTGTAAACGTCTCCAAAGAACAGGTGTTCACACTGGACCATTTGTCCGCACTGAAGTGGCTGGATAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155304 lncRNA downstream 20836 18205668 ~ 18206132 (-) True G123876
TU155273 lncRNA downstream 174636 18051097 ~ 18052332 (-) True G123845
TU155254 lncRNA downstream 232205 17933464 ~ 17994763 (-) True AMCG00002533
TU155242 lncRNA downstream 411502 17811518 ~ 17815466 (-) True G123824
TU155213 lncRNA downstream 530464 17690038 ~ 17696504 (-) False AMCG00002524
TU155370 lncRNA upstream 228013 18469234 ~ 18469607 (-) True G123926
TU155412 lncRNA upstream 343488 18584709 ~ 18585930 (-) True G123961
TU155446 lncRNA upstream 540924 18782145 ~ 18782366 (-) True G123981
TU155557 lncRNA upstream 1042657 19283878 ~ 19284293 (-) True G124068
TU155687 lncRNA upstream 2060851 20302072 ~ 20334454 (-) True G124175
AMCG00002537 mRNA downstream 2118 18215795 ~ 18224850 (-) True AMCG00002537
AMCG00002539 mRNA downstream 22485 18203377 ~ 18204483 (-) True AMCG00002539
AMCG00002536 mRNA downstream 44341 18172131 ~ 18182627 (-) True AMCG00002536
AMCG00002532 mRNA downstream 164903 18058532 ~ 18062065 (-) True AMCG00002532
AMCG00002533 mRNA downstream 185395 17992061 ~ 18041573 (-) False AMCG00002533
AMCG00002542 mRNA upstream 78918 18320139 ~ 18335125 (-) True AMCG00002542
AMCG00002541 mRNA upstream 142599 18383820 ~ 18389641 (-) True AMCG00002541
AMCG00002543 mRNA upstream 185503 18426724 ~ 18427338 (-) True AMCG00002543
AMCG00002544 mRNA upstream 241512 18482733 ~ 18492180 (-) True AMCG00002544
AMCG00002545 mRNA upstream 263676 18504897 ~ 18508670 (-) True AMCG00002545
TU155250 other downstream 237503 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 1387246 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 3280657 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4572732 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 5197562 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 4844773 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 4940700 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 6020344 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 6050566 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 8062661 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile