RNA id: AMCG00002539


Basic Information

Item Value
RNA id AMCG00002539
length 705
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00002539
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18203377 ~ 18204483 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTCATTCCCAGACTCCGACCTGCAGACATGTCCCCTTTGCAAGGAATTGTGTGGCTCCTCAGCTCCGATCTCCTCCAACTCCTCTACCTCATCCTCTTCATCTCAGACCTCCAGCTCCTCTACCTCATCCTCCAGGAGGCTCCACGTCCTGCCCTGCCTCCATGCCTTCTGCAGGCAGTGCCTGGAAGGGCAGCGGATCCCCGGCGACCCCTTGAAACTTCGGTGCCCGACTTGTGACCAAAAGGTCTCCATATCCGAGTCCGGCGTGGACGCCTTGCCCTCGTCCAATTTCCTCTTCAGCAATCTCTTGGACGTGGTGGTGTCCTCGGAGGAGCCAAACAAGAACAGTGGCAGGAGTAACAACCACCCCCATGGGCTGATCCGGGCTCACCACCTGGGGGAACCTCAGTGTAGCTCCTGCGACGAAGGCAACCCCGCTACCTCACACTGCCTGGACTGCCAGGAGTACCTCTGCGACAACTGCGTCCGGGCCCACCAGCGGGTCCGGCTGACCAAAGACCACTTCATCGAAAGGTTGGTGGAGAGCCTGCACCTGGGGAGCCGGACCACCAACTCCAACACCCCGGTCACCCTTTCCCAGTCCTTCCACTCCAACTACTCCCTGCTGCCGGTCTTTCAAGACAGGATGAGCTTCTGCCAGCAGCACGACAGTGAGCAAAACCTGAAAGTCCACGTCTAA

Function

GO:

id name namespace
GO:0072089 stem cell proliferation biological_process
GO:2000177 regulation of neural precursor cell proliferation biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0060964 regulation of gene silencing by miRNA biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0021915 neural tube development biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0010586 miRNA metabolic process biological_process
GO:0000932 P-body cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155273 lncRNA downstream 151045 18051097 ~ 18052332 (-) True G123845
TU155254 lncRNA downstream 208614 17933464 ~ 17994763 (-) True AMCG00002533
TU155242 lncRNA downstream 387911 17811518 ~ 17815466 (-) True G123824
TU155213 lncRNA downstream 506873 17690038 ~ 17696504 (-) False AMCG00002524
TU155202 lncRNA downstream 528267 17660067 ~ 17675110 (-) True G123788
TU155304 lncRNA upstream 1185 18205668 ~ 18206132 (-) True G123876
TU155370 lncRNA upstream 264751 18469234 ~ 18469607 (-) True G123926
TU155412 lncRNA upstream 380226 18584709 ~ 18585930 (-) True G123961
TU155446 lncRNA upstream 577662 18782145 ~ 18782366 (-) True G123981
TU155557 lncRNA upstream 1079395 19283878 ~ 19284293 (-) True G124068
AMCG00002536 mRNA downstream 20750 18172131 ~ 18182627 (-) True AMCG00002536
AMCG00002532 mRNA downstream 141312 18058532 ~ 18062065 (-) True AMCG00002532
AMCG00002533 mRNA downstream 161804 17992061 ~ 18041573 (-) False AMCG00002533
AMCG00002531 mRNA downstream 300567 17876005 ~ 17902810 (-) True AMCG00002531
AMCG00002530 mRNA downstream 346309 17838579 ~ 17857068 (-) True AMCG00002530
AMCG00002537 mRNA upstream 11312 18215795 ~ 18224850 (-) True AMCG00002537
AMCG00002538 mRNA upstream 22485 18226968 ~ 18241221 (-) True AMCG00002538
AMCG00002542 mRNA upstream 115656 18320139 ~ 18335125 (-) True AMCG00002542
AMCG00002541 mRNA upstream 179337 18383820 ~ 18389641 (-) True AMCG00002541
AMCG00002543 mRNA upstream 222241 18426724 ~ 18427338 (-) True AMCG00002543
TU155250 other downstream 213912 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 1363655 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 3257066 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4549141 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 5173971 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 4881511 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 4977438 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 6057082 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 6087304 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 8099399 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile