RNA id: AMCG00002540


Basic Information

Item Value
RNA id AMCG00002540
length 1641
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00002540
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18337756 ~ 18346198 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAAGGGGCCTGTCAAATCTTGACAATGGCGGACTCTCGTTCACTCCATTGGTGGTCATTGAACTGGCCAAGGACACCAAAGAAGAAGCTGTATCGTGGTTATTAAAGAGGGTGAAAGACAAGCAGCGGGATGGAGGGGCTGATCTGTTTGTGGAGCAACTGCCAAAGGACGTCTGGGACAGTGCTAATGAAAACCCTAATGTGTTTATCGTGAGCGCCTCCAGAGAACGACTGCTATTCGGGGCTGAGGACGTCGGCCTGGTAAAGGAATGTGATGGTGATGAGTTTCTCAGCATGGCAGAGTGTCAGTACATTATTAAGTACGGGTTGGATACCCTGAGGGCCAGGGAGGAGACTAGCATCCCGGGTTATCCGCAAGTTAAGCTGTACCCAGGAAAATCCATCTACAAAATCCGCCTCTACTTCGGCGAAGCCATTGCCATATACTTTGGTTTCCTGGAGTACTTCACCTTTGCCTTGTTGCCTATGGCCTTGATTGGAATCCCATACTACCTGTTTGCCTGGGAGGATTACGACAAATACGTGCTCTTTGCCTCGTTCAACCTGGTGTGGTCCACTGTCATTCTGGAGGTGTGGAAGAGATCCTGTGCCTGGCTGGCCTACAATTGGGGCACCCTCATCAGAAAGAAGGACTTTGAGGAGCCAAGACCTGGTTTCCATGGCGTTTTGGGCCTGAACCCCGTTACAGGGCGTGAGGAGCCCACCTACTCCAGCATGAAGAGGCAGCTGCGCATCTACTTGGTGTCAGTCCCCTTCGTCTTGTTGTGCCTTTACTTCTCCCTGTACGTCATGATGATCTACTTCTCCTTGGAGAACTGGGCTCTGAACCTGCACGAGGAAGAGCAGTCCTTTTGGACTAGCCTGTTGCTGTTTGTGCCCAGTATCATCTATGCCATCGTCATCGAAATCATGAACAGGCTGTACCGCTACGCTGCTGAGTTCTTAACCGGCTGGGaAAACCACAGACTGGAATCAGCATACCAAAATCATTTGATCCTGAAGGTTCTGGTGtTCAACTTTCTCAATTGCTTTGCATCTCTGTTCTACATTGCGTTTGTGCTTCATGACATGAAACTTCTAAGACAGAGTCTTGCTACGCTGCTCATAACATCACAAATCCTCAACCAAATTATGGAATCCATCCTTCCGTTCTGGTTGCAAAAGAGACGCAACAAAATGGTGCAGAAGAAAATTGGAAACATCACGGTGGACAAGGAACTGCCCTGGACCGAGCAAGTGAAGCTGGAAGTGGATATGAGCACTTACTTAGGCACGTTTGATGACTACTTGGAGCTTTTCCTGCAGTTTGGCTATGTCAGCCTTTTCTCCTGTGTCTACCCTCTAGCAGCTGTGCTGGCGGTTTTGAATAATGTCACGGAAATCTATTCAGATGCCTTAAAAATGTGCCAAGTCTTCAAAAGACCCTTTTCAGAGCCTGCAGCCAACATCGGAGTCTGGCAGtTGGCATTCGAGACGATGAGTGTTATTGCGGTCATCACCAACTGTGCCTTGATCGGTATGTCGCCCCAAGTCAAGTCCTTCTTCCCCGACTCGGAGACGCACCTCATCATGCTAATAGTGGCCGCAGAGGTAAGTCTGAACACTGTAGCTCGCTGA

Function

GO: NA

KEGG:

id description
K19327 ANO10, TMEM16K; anoctamin-10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155257 lncRNA upstream 285418 18051012 ~ 18052338 (+) True G123833
TU155224 lncRNA upstream 397123 17926699 ~ 17940633 (+) True G123808
TU155212 lncRNA upstream 577561 17695860 ~ 17760195 (+) True G123797
TU155044 lncRNA upstream 1189420 17091975 ~ 17148336 (+) True G123653
TU155357 lncRNA downstream 158690 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA downstream 160706 18506904 ~ 18509774 (+) False G123916
TU155389 lncRNA downstream 208287 18554485 ~ 18556562 (+) True G123943
TU155399 lncRNA downstream 237971 18584169 ~ 18586027 (+) True G123950
TU155463 lncRNA downstream 498170 18844368 ~ 18861644 (+) True G123993
AMCG00002534 mRNA upstream 176192 18145212 ~ 18161564 (+) True AMCG00002534
AMCG00002535 mRNA upstream 286840 17998046 ~ 18050916 (+) True AMCG00002535
AMCG00002527 mRNA upstream 526029 17806735 ~ 17811727 (+) True AMCG00002527
AMCG00002525 mRNA upstream 662646 17661879 ~ 17675110 (+) True AMCG00002525
AMCG00002526 mRNA upstream 676583 17652475 ~ 17661173 (+) True AMCG00002526
AMCG00002546 mRNA downstream 110853 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002553 mRNA downstream 453662 18799860 ~ 18810379 (+) True AMCG00002553
AMCG00002562 mRNA downstream 727495 19073693 ~ 19127947 (+) True AMCG00002562
AMCG00002561 mRNA downstream 783869 19130067 ~ 19133567 (+) True AMCG00002561
AMCG00002565 mRNA downstream 1021118 19367316 ~ 19385301 (+) True AMCG00002565
TU155222 other upstream 353026 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 1377674 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 5208059 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 5276071 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 6197291 12133786 ~ 12140465 (+) True G122746
TU155458 other downstream 485816 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 784205 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 1927891 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 4721926 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 4806450 23152648 ~ 23290535 (+) True G124689

Expression Profile