RNA id: AMCG00002542


Basic Information

Item Value
RNA id AMCG00002542
length 3801
RNA type mRNA
GC content 0.39
exon number 8
gene id AMCG00002542
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18320139 ~ 18335125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGAGGAGACTGTGGCAACGGAAAGAGGAGCGGTTCATCGAATTGTGATGATTCTTGGTATACATGTTCTGTACCACAAATTCTTGAGGTTCCTGGACTCTACCTCAAGGTCATGGTGGATAACCAGTTGGCTTCCGTCATGGAACCCAACATCTCTATCACAGTTAAAAAATGCAGAGGAGAAGATGCTACagtcAATTACAGCAACGTTTTCCAAGCAGAATATTCCGATATCCAATGGAAACATGATATGGACGCTTTCCTTTAAGAGCAACACTGCCAGTAAGATCCCCCTGGTTCTGATCCACGGCTTCGGTGGAGGAGTAGCAATGTGGGCGCTCAACCTGGAAGCCCTGTCCCAGCAACGAACTGTATACGCGTTTGACCTGCTGGGGTTCGGGAGGAGCAGTCGGCCCCAATTCAGCAGCGAAGCGGAGAAGGTGGAAAACCAGTTTGTGGAATCAATAGAAGAGTGGAGGGTAAAAGTGGGCGTGGAGACCATGATTTTGCTGGGACACAATCTGGGTGGTTATTTGGCAGCTGCTTATACACTCAGATACCCATCAAGGATTAAGCACCTTATCCTGGTGGAGCCGTGGGGTTTTCCCGAGAGACCCAACACCCCTGAGCAAGACAGGCCGATTCCCGGCTGGATCAAAGCACTGGGAGCAATGCTGAGCCCCTTCAACCCGCTGGCTGGGCTGCGGTTGGCTGGACCTTTAGGACCTATACTGGTTCAGCGACTCAGACCAGACTTCAAAAGGAAATACGCCTCCTTATTTGATGACAACACCGTGACAGAATACATTTATCACTGCAATGTTCAGATACCCAGTGGAGAAACGGCTTTTAAGAATATGACCATTCCATATGGGTGGGCGAAGAGGCCAATGCTGCAGCGAGTGGCCCTGATTCAAGATGACATCCCCATTACGGTGATTTATGGGGCTCGCTCCTGTATAGATGGCAACTCTGGCAGTTCAGTCAAAGAAATAAGGCAGAACTCGCATGTGGAGACAATCGCAATACGAGGTGCAGGCCACTACGTCTATGCCGATCAGCCTGAAGATTTCAATCAAAGAGTCTTACAGATCTGTAGCAATGTGGAGTGAAGGAGACGGCCTCTCCGTTGAAACATGCAATAATCGCCGCTTTCACACCAGGGTGGAAGTCAACGTTAACCTATGAAAGGCACTCCTTTGGAAATTAGCCACAAGAAAACCTCCAAATCCCTCATATTTTGCACTCGCACCCGGGGACTTTCTATGGCTACACCGCTCGATAGTGCCTtcattatacagtatttttttattccattaacACACATTGATGACATAGGTAgatttttgtggtgttttttaaattgaaagaaaaggaaggggGTGAGTAGGAacttgaaaagagaaaaatattcaTCTCATACCTTGATGGAAATTTTTCTGATGTTACCACTAGAAACCATAGTACAGATCCTCAGaagagaatacattttttatgtgtattttgttttaattctcttGCTTTTACTATTGGCTTCTGactttttccttctctttctgtatatagtatatatatgattataggTTGGGTTTTTTTGGTCTGTGACTGACTATTTCCCcttattttattcagattttatctttaaaatgtcagtttacTCCATTTTGTACTAATAGAAGATGTTTATTAACaaagaaatgttaatattatcctttcatttatttaactattattTGTGCGCTCATAATGCCCTGGACCATACTAATGATAATCAACGaatgtaaagatttttttaaaaaaagtattaatccCCTTCAAATACTGTGAAATTGTTCTCCTCCTTTTGTAAAAAGGATGGAAAAAGTCCTATCCTAACATTTTGATTACAACTAGCCTTGCATATCAATACACTGACATAAATATCTCATTTTGGCATTCGGCACATTTTTGTCAATTTATGACCGACTTTACTGGAACAGGAATAAAATGCTTTCTTCATCTTCATTATAGTCACTCAATTTCTTTTCTCAGGAGAACACAGAGGGGAACACATTGACTTGAAGAGTAGTAGTTCCGGTTTGAATGTGAGGCCCCAGCCGTCACAATGACCTCCTTTCAAAGTCAATCTAGTATGCTCCAAGACGTATTTCATCAGAATATCATCAAAATAGCACATCACCTGTTCTGCACGATCCAAGCAGTTGATGAACATCTCTCAATTCAGTTCATAgcatatacattttctacatcTAACGTATATGTAAACTGGACTAACATGTATGTCTTGTGTATAACATTATGCTACTGGGTAACATCCTTTGtagaaatatttaattcataataatgtgCATCCTCTAAAATCTATTGTATAGTGTGAGACTCCCTGTTTTCAATGCAACACATTGTAActtattcatttagttttacAATATAAAGTTAGACACTGTTGGTACTGTGAGCAAAACTAATCAAGATATTTTaggacttttgttttgtaaattattttaaaatttctaCACTTAATATATTTTGGTTAGAATTGAGTCTGGATTAGAGGAGAGAGTTCATACATTAGCACTTAAATTCTCCACAGAATAATATTATGTAGACCTTGAGGCAAATGTAAGCTTTAGTTTTGAAGTGTTCATTTTCTCAAGTGTTGCTGCCAATAGTAAAGGTTAGTATAGATAGGAGTAGATGATCTGCACAAAGCAGCTTGCTGTGTAAGATCACTGAAGGGATTGCTTAGAGTTCTGCCGAAGGAAACATGAATGGTTCTCTTTCAGTTTAATTCACCATCTACTTGCTCTAGCAACAGGTCTTGTcgtttttattttagatcatatttgtatttatgaaaaaaacaatctgccCTGAATACTTTCAGTGAGAttattctacattttttttgtattgtagtaTATACCTCATATGATGTACGTTACCAACCACCACTGTGAATCATGCGTCTTCCTTTGGCTCctcttgtctttttatttaccATCAGTTACAGTAGGGAGAGACTTTCGTGTCAGTCTGAGATCCAAGGAAGCAGAAGGGGCAGTTTTCTGGACACTTTCAGACCTGTCCTCCCCTGCCCGAAGTAGATAGAAACAAGGCAAGCACAATTCCAAGCAGTCTCTTTATTTGATGTGACTTTGCTATTGTGTGGGTGATCGAAACTTGAGTCCCTGTAGAGGAGTTGTCGGCCTTAAGTGGTCCCTTTGGATTGGACTGTGGTTAAGCCAGGATATCATTAGGTTGTTTGGCACATTTTAGTCCTATTCTAATCAAACACGCACAGAGGAAGCCATAAGAATCATTTATGCAAAAACTAAGCATGTGTGCACAATAGTGGGCAATATAGCTTCAGACCTCAGAATATTTattggtttttattattactattatgtatttaaatacactgaGTGAATGTAAAGCAATACATCACTGTACAAGTATACATGTTAAGTGTACCAAATAGAAAAGCTGGGAACAAACAactgtcttttttgtttttcaaaactgctATTACTGCATAATTGTGTGTCATAAGGTTTTCTCTGTAAATATGTGAAACTTCTGTCATCTTCTAGCCAAGCAATTTAATGCTCTCTTCCTTTTTAACCCTCTCATGATGTTGAAACTCTGTGCAGAGCATTGCTTAGTTTCCCAGAAACGTTTTCTCTCCGGGTACTGTTTAACAGTTTACTCTTTCTGTATTCCTCAGTCACTGCAGAACAATCAGGAAGTTGTATGAATgacctgtaaataaatacaatatttcatcTTTTCAA

Function

GO: NA

KEGG:

id description
K13699 ABHD5, CGI-58; abhydrolase domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155304 lncRNA downstream 114007 18205668 ~ 18206132 (-) True G123876
TU155273 lncRNA downstream 267807 18051097 ~ 18052332 (-) True G123845
TU155254 lncRNA downstream 325376 17933464 ~ 17994763 (-) True AMCG00002533
TU155242 lncRNA downstream 504673 17811518 ~ 17815466 (-) True G123824
TU155213 lncRNA downstream 623635 17690038 ~ 17696504 (-) False AMCG00002524
TU155370 lncRNA upstream 134109 18469234 ~ 18469607 (-) True G123926
TU155412 lncRNA upstream 249584 18584709 ~ 18585930 (-) True G123961
TU155446 lncRNA upstream 447020 18782145 ~ 18782366 (-) True G123981
TU155557 lncRNA upstream 948753 19283878 ~ 19284293 (-) True G124068
TU155687 lncRNA upstream 1966947 20302072 ~ 20334454 (-) True G124175
AMCG00002538 mRNA downstream 78918 18226968 ~ 18241221 (-) True AMCG00002538
AMCG00002537 mRNA downstream 95289 18215795 ~ 18224850 (-) True AMCG00002537
AMCG00002539 mRNA downstream 115656 18203377 ~ 18204483 (-) True AMCG00002539
AMCG00002536 mRNA downstream 137512 18172131 ~ 18182627 (-) True AMCG00002536
AMCG00002532 mRNA downstream 258074 18058532 ~ 18062065 (-) True AMCG00002532
AMCG00002541 mRNA upstream 48695 18383820 ~ 18389641 (-) True AMCG00002541
AMCG00002543 mRNA upstream 91599 18426724 ~ 18427338 (-) True AMCG00002543
AMCG00002544 mRNA upstream 147608 18482733 ~ 18492180 (-) True AMCG00002544
AMCG00002545 mRNA upstream 169772 18504897 ~ 18508670 (-) True AMCG00002545
AMCG00002549 mRNA upstream 193528 18528653 ~ 18545075 (-) True AMCG00002549
TU155250 other downstream 330674 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 1480417 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 3373828 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4665903 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 5290733 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 4750869 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 4846796 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 5926440 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 5956662 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 7968757 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile