RNA id: AMCG00002546


Basic Information

Item Value
RNA id AMCG00002546
length 1740
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00002546
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18457051 ~ 18458790 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACGTGGCGGCTGTGCTGAACGGTCTGCTGGTGTCTGTGCTGGCGGCGGTGCTGTGGAAGTACGCCAAGCTGCGAGAGCACGCATCTCTGGTGGAAGAAGAGCTCCTCCTGACCCGCCAGTCCCAGGAGCTCTCCCAGGTCCGTATCGATTACCATGCCGCCCTGCAGGCCCTGCAGGAGAAGGGCACCCGCATGGTGTGCACCGGGAAGATGCACACCGACCGCATCTGCCGCTTCGACTACCTCTGCTACTCCACCGAGGCCGAGGAGTTTGTCTTCTTCCACAGCAACTCCTCGGTCATGCTTCCCAACCTGGGCTCCAGGAGGTTCCAGCCTGCTCTCCTGGATCTCTCCTCCGTGGAGGACCACAACACGCAGTATTTCAACTTCCTGGAACTGCCGACACCCGCTCTCAAATACATGCCCAAACCCGTCTTTGTCCCCGATGTGACCCTGATCATGAATCGGTTCAACCCAGATAATCTGATGCACATCTTCCACGACGACCTCCTTCCCATCTTCTACACCATGAGCCAATACTCAGACCTGGACGAGGAGGCCCGCTTAGTCTTCATGGAGGGCTGGAGCGAGGGAGCACATTTCGACCTCTACCGGCTGCTAAGTGGAAAACAGCCCCTCCTGAAGGAGCAGCTCAGGAACTTCGGCAAGCTCCTGTGTTTCACAAAGTCCTACGTAGGGCTGTCCAAAATGACCACCTGGTACCAGTATGGCTTTGTTCAACCACAAGGCCCCAAAGCCAACATATTGGTGTCAGGAACGGAAGTCCGTAAGTTCACACGCTTTCTGATGGCTAAACTCAACATAACCAAGGAGGAGAGCCCTGAACCTGAGGAGTACATTGTGGTCTTTAGCCGTAGCATCAACAGGCTCATCCTTAATGAAGCCGAACTAATTTTGGCTCTGGCTCAGGAGTTTCAGATGAAGACGATCACGGTGTCTTTAGATGAGCACTCCTTCGCAGATATCGTACAAATAATCAGTAAGGCGTCAATGCTTGTCAGTATGCACGGGGCTCAGCTGGTGACCTCACTCTTCCTGCCCCGCGGCGCTATAGTGGTAGAGCTTTTCCCATATGCTGTGAACCCTGAGCACTACACGCCCTACAAAACTATAGCCTCCTTGCCTGGCATGGATCTTCAGTATGTGGCCTGGCAAAACACCAAAGAAGAGAACTCCATTGCGTTCCCAGACAGGCCCTGGGATCAAGGCGGAATAGCCCATCTAGAAAAGGAGGAGCAGGATCGCATCTTAAAAAGCAAGGAGGTGCCTCGGCACTTGTGTTGCCGTAACCCGGAGTGGCTTTTCCGCATTTACCAGGACACTAGTGTGGACATCCCCTCTCTTCTTGAAGTACTGAGGCAGACGGTGAAGTCTAAGCCCAATCTGAAAAAGTTTAAGCCGGCCAGCACAATTCACCCCGGTAAAGTGCGGGAACCCAAATGCCAGGCTTCTGTACAAGGAACCAACGAGGCGAAGCTGACAGTGTCGTGGCAGATCCCTTGGAATCTGAAGTATTTGAAAGTCAGGGAGGTCAAGTATGAAGTGTGGATACAGGAGCAAGGGGAAAACACGTATATGCCTTACATTCTTCCTCACCAGAATTATACCTTTTCCGAGAACATTAAGCCTTTCACCACGTATCTGGTGTGGATACGCTGCATTTTCAACAAAACTCTTTTAGGCCCCTTTGCAGATGTTCTGATGTGTAGAACCTAG

Function

GO: NA

KEGG:

id description
K18207 POMGNT2, GTDC2; protein O-mannose beta-1,4-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155257 lncRNA upstream 404713 18051012 ~ 18052338 (+) True G123833
TU155224 lncRNA upstream 516418 17926699 ~ 17940633 (+) True G123808
TU155212 lncRNA upstream 696856 17695860 ~ 17760195 (+) True G123797
TU155044 lncRNA upstream 1308715 17091975 ~ 17148336 (+) True G123653
TU155357 lncRNA downstream 46098 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA downstream 48114 18506904 ~ 18509774 (+) False G123916
TU155389 lncRNA downstream 95695 18554485 ~ 18556562 (+) True G123943
TU155399 lncRNA downstream 125379 18584169 ~ 18586027 (+) True G123950
TU155463 lncRNA downstream 385578 18844368 ~ 18861644 (+) True G123993
AMCG00002540 mRNA upstream 110853 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002534 mRNA upstream 295487 18145212 ~ 18161564 (+) True AMCG00002534
AMCG00002535 mRNA upstream 406135 17998046 ~ 18050916 (+) True AMCG00002535
AMCG00002527 mRNA upstream 645324 17806735 ~ 17811727 (+) True AMCG00002527
AMCG00002525 mRNA upstream 781941 17661879 ~ 17675110 (+) True AMCG00002525
AMCG00002553 mRNA downstream 341070 18799860 ~ 18810379 (+) True AMCG00002553
AMCG00002562 mRNA downstream 614903 19073693 ~ 19127947 (+) True AMCG00002562
AMCG00002561 mRNA downstream 671277 19130067 ~ 19133567 (+) True AMCG00002561
AMCG00002565 mRNA downstream 908526 19367316 ~ 19385301 (+) True AMCG00002565
AMCG00002564 mRNA downstream 948268 19407058 ~ 19410399 (+) True AMCG00002564
TU155222 other upstream 472321 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 1496969 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 5327354 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 5395366 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 6316586 12133786 ~ 12140465 (+) True G122746
TU155458 other downstream 373224 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 671613 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 1815299 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 4609334 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 4693858 23152648 ~ 23290535 (+) True G124689

Expression Profile