RNA id: AMCG00002550


Basic Information

Item Value
RNA id AMCG00002550
length 2783
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00002550
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18554798 ~ 18572982 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTGGATGGGTCTTTTTGCTCGTGGTAACCTTGTGTGTTTCAGACGTGCTCTTATGACAGATTGAGCCACGATTCTATTGGCTGTCTGAAGGGGGCACTTGGCATATAAGCAGTTTCTGTTTCCCATGCTCTCGAAAGCTACAACAGAAGCCTGACGGGGACGAGAGTGTCATTGCCATAATTGTGCCCTTTTTGAAAATGGACACGACCGAGTTCAGGAGACGAGGGAAGGAGATGGTGGACTACATTGCGGACTACATGGAGAACATTGAGAAGAGAGACGTGTATCCCAATGTGGAACCTGGCTATCTGAGATCTCTGATTCCGGACGAAGCCCCAGAAGATCCAGAAGCCTATGAGGAAATTGTCAAGGATATTGAGAGGGTCATAATGCCCGGGGCTGCTAGCCCAGCCTGCACAGAGCTGGAAACAGTGATGTTGGATTGGCTGGGCAAGATGTTAAAGCTGCCTGAGGAATTTCTGGCTGGCACTATGGGACAAGGTGGAGGTGTGATACAGggCACCGCCAGTGAAGCCACTTTGGTTGCCCTCTTAGCTGCCCGGTCAAGGACAGTCAAGGCAATTCAAGCTGAGACCCCAGAGCAAGCTGACGCAGATATCATATGCAGACTGGTAGCCTACTCTTCCGATCAGCTCTGTGCCACTCTAGGGACGACACCATCTTGTGCATTTGATCACATCAGTGAACTAGGTCCTATTTGTAATTCGGAGAACATCTGGATGCACATCGATGCGGCATATGCAGGAAGTGCTTTCATTTGCCCTGAATTCAGGCCTCTTCTTAATGGAGTGGAGCACTGGCAAATACCACTAGGCCGAAGATTTCGCTCTCTAAAAATGTGGTTTGTATTCCGGATGTACGGGCTCAAAGGCCTACAGGAGTACATTCGCAAGCACGTGAACCTGGCCAGGGAATTTGAGACTTTAGTTCGCAGTGACCAGCGTTTTGAGATAAGTGCCGATGTGGTGCTGGGATTGGTATGCTTCAGACTGAAgGGACCTAATGACTTGAATGAGAAACTTCTCAAGAGTATAAACGACACGAGGAAGATCCACCTAGTACCCTGTCAGCTGTCGGGCAAGTTCGTGCTGCGCTTTGCCGTGTGTGCGCGCACCACCGACTCCCAGCACATCCAGCTCGCCTGGAAGCGCATCGCCAGCGCCGCCTCCCTCATCCTGCAGCAGTGAGAACAGAGCACGAACACAGAGAGGGGCACCTTCACCGACACTGTTACCTTCCCACGCACCCAAGACAGAAAGACTGcccaattaaatgtgtttgcataTGCAAGAGGTTGTGTCAGCTATTGGACATATTGCCCTTCCTTAGGCAAGGAATGGTTTGGACTCTGGAAGAGGCCATAAAGGGAATAAAAACCTTTAGACTAGTGTATAAAcacattcacatacatatacagacgggtgacaaattaaaggaaaaccaacataaagtgtctcagtaaggttttgggcaccacgagccgccagaacagcttcaatgctcttggcacagattctatgagtctctgaactctactggagggatgagcaccattcttccaaaagatattccctcatttgatattttgatgatggtggtggagagcgctgtctgacacgttggtccaaaatctcccataggtgctgGTGACtggagatctggtgactgcgagtAAAGGTGATCACTCCGAATAACTTTCTAATGATTtacagtgacccttccctctattGCGACAAGTTGTacgaaaatgccccccacagcgtaacagagcctccggaccccctctgtaggggtcaagcagtcaggcctctACCATTcacttggtgtcccacacatgcactcgcccacttgacGAGAATaaggtgaaggatgactcatctgaccatgtcagtttttccacatctctgtagaccagtgcctatggtttgtGCACCACTGAAcactcaaatgtgcatttgtctttgtaatgagacttaattgtatcatgcagtacacctgtttgaaggcatctgcattcgttatgttcctccactcatttattcaggttttcctttaatttgtcactcatctgtatatatatttatagaaagaGATTGAGAGGATGGGACCCTGGATGGGTGGGACCCTGGACCAAAGGTTGTGGGCTTTAAGATCATAAAGTAATATCAATTAGTAATAGTTTCCACCGTCGGCCATCGTGTAGGCTCACTGTCAACATTGATATTTCTATGTGATTTAAAGCTGGATGCCCTTTGCATTCTTATGCAGACGTCTGGCACATGCCACGGTTGTGTAGCCCTGCCTGTTCTAGCTCCTGGTTCACCCTGCATTAATGACAACTGACAGTGCAGAAACACCCAAAAGCCTTACGGTAGCATGTGTGCTCCTCTGTGTGCTTAACCTTAATACCGTTGTTCATCCAAGCTGCTGGAAATCCTCTCCAAAGAATGGTCAAGGAGCTAAAAATATAGCAGGGGATTTTGTGTGAGGGTGATTGAGAGAGATTTGCCCATCTGCAGATGACTGACTTGTTGCCCTtgtttaaactgaaagaaacataTTGAACACAAATCTGATAATGAAACTGCCAGCAGGAGTCTGtatgtcttatttttttgtgagaggagctgtttaattgtttgaattGGGACCACTGCAGTATAGATATCGATGTGTATGTAATCTCCAAGGCTGTGCTTACTAGACAGCATTTCATATCCACTGATTttgactaaattaaaataataaatgtcatgcac

Function

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155370 lncRNA downstream 85191 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 348666 18205668 ~ 18206132 (-) True G123876
TU155273 lncRNA downstream 502466 18051097 ~ 18052332 (-) True G123845
TU155254 lncRNA downstream 560035 17933464 ~ 17994763 (-) True AMCG00002533
TU155242 lncRNA downstream 739332 17811518 ~ 17815466 (-) True G123824
TU155412 lncRNA upstream 11727 18584709 ~ 18585930 (-) True G123961
TU155446 lncRNA upstream 209163 18782145 ~ 18782366 (-) True G123981
TU155557 lncRNA upstream 710896 19283878 ~ 19284293 (-) True G124068
TU155687 lncRNA upstream 1729090 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 1967325 20540307 ~ 20540523 (-) True G124222
AMCG00002549 mRNA downstream 9723 18528653 ~ 18545075 (-) True AMCG00002549
AMCG00002545 mRNA downstream 46128 18504897 ~ 18508670 (-) True AMCG00002545
AMCG00002544 mRNA downstream 62618 18482733 ~ 18492180 (-) True AMCG00002544
AMCG00002543 mRNA downstream 127460 18426724 ~ 18427338 (-) True AMCG00002543
AMCG00002541 mRNA downstream 165157 18383820 ~ 18389641 (-) True AMCG00002541
AMCG00002547 mRNA upstream 13096 18586078 ~ 18602108 (-) True AMCG00002547
AMCG00002552 mRNA upstream 56667 18629649 ~ 18632830 (-) True AMCG00002552
AMCG00002548 mRNA upstream 128913 18701895 ~ 18713091 (-) True AMCG00002548
AMCG00002551 mRNA upstream 150415 18723397 ~ 18759586 (-) True AMCG00002551
AMCG00002557 mRNA upstream 213138 18786120 ~ 18786641 (-) True AMCG00002557
TU155250 other downstream 565333 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 1715076 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 3608487 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4900562 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 5525392 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 4513012 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 4608939 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 5688583 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 5718805 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 7730900 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile