RNA id: AMCG00002558


Basic Information

Item Value
RNA id AMCG00002558
length 396
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00002558
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19248630 ~ 19258630 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGCAAGAGGCGATGAGAGGCAGACGCTATTTGCTGGATAGGAGTGAGAATGCGACTGCTAAACAGAAGTCTACAGACTGGCTCTACGAGTCCTACTATTGTATGAGCCAGCAGCACCCTCTGATAGTGTTTCTGCTTCTAATTGTGATGGGAGCCTGCCTGGCTCTGCTGGCTGTGTTCTTTGCTTCTGGGCTGGATATTGAAGACCATGTGGCATTTGTAATCACTGTCCCTACGGCTCTTGCAATTTTCCTGACGATCTTCATCCTGGTCTGCATCGAGTCCATCTTCAAGAAGCTGTTGCGCATTTTCTCTTTGGTTATCTGGGGATGTCTGGTTGCCATGGGatatctttttatgttttttggaGGCATCATCTGTCCTTGGGACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155446 lncRNA downstream 466264 18782145 ~ 18782366 (-) True G123981
TU155412 lncRNA downstream 662700 18584709 ~ 18585930 (-) True G123961
TU155370 lncRNA downstream 779023 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 1042498 18205668 ~ 18206132 (-) True G123876
TU155273 lncRNA downstream 1196298 18051097 ~ 18052332 (-) True G123845
TU155557 lncRNA upstream 25248 19283878 ~ 19284293 (-) True G124068
TU155687 lncRNA upstream 1043442 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 1281677 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 1720467 20979097 ~ 21116735 (-) True G124327
TU155898 lncRNA upstream 2388425 21647055 ~ 21678545 (-) True AMCG00002584
AMCG00002559 mRNA downstream 74017 19171519 ~ 19174613 (-) True AMCG00002559
AMCG00002560 mRNA downstream 88294 19133195 ~ 19160336 (-) True AMCG00002560
AMCG00002554 mRNA downstream 269673 18900273 ~ 18978957 (-) True AMCG00002554
AMCG00002555 mRNA downstream 353070 18871363 ~ 18895560 (-) True AMCG00002555
AMCG00002556 mRNA downstream 461676 18786673 ~ 18786954 (-) True AMCG00002556
AMCG00002563 mRNA upstream 75281 19333911 ~ 19351773 (-) True AMCG00002563
AMCG00002567 mRNA upstream 103705 19362335 ~ 19366244 (-) True AMCG00002567
AMCG00002566 mRNA upstream 135712 19394342 ~ 19403623 (-) True AMCG00002566
AMCG00002568 mRNA upstream 223236 19481866 ~ 19493271 (-) True AMCG00002568
AMCG00002569 mRNA upstream 264222 19522852 ~ 19543805 (-) True AMCG00002569
TU155250 other downstream 1259165 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 2408908 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 4302319 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 5594394 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 6219224 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 3827364 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 3923291 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 5002935 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 5033157 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 7045252 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile