RNA id: AMCG00002560


Basic Information

Item Value
RNA id AMCG00002560
length 1834
RNA type mRNA
GC content 0.44
exon number 16
gene id AMCG00002560
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19133195 ~ 19160336 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGGTGAGAGATGCCACAGGAGTTGACATAAACATGCGTGTTGGCGTGCATTCTGGGAACGTGCTGTGTGGTGTCATCGGGCTTCAGAAGTGGCAGTACGATGTTTGGTCACATGATGTTACATTGGCCAATCATATGGAGGCTGGTGGAGTCCCTGGACGAGTTCACATCACTTCAGTCACGCTGGAACATTTGAATGGGTCCTACAAAGTCGAAGATGGAGATGGACAAAACAGAGACCCTTATTTAAAGGAACATGGAGTTATAACCTACCTTGTCATCAATCCAAAAGGGGAGAAGCGCAGCCCTCAGCATCACTTCAGACCCAGACAAACGCTGGATGGAGCCAAGATGAGGGCCTCGGTGCGGATGACTCGCTATTTGGAGTCCTGGGGAGCCGCCAAGCCCTTTGCCCACTTACACCACCGAGACAGCATGACTACTGAGAATGGCAAGATCAACACAGCGgATGTACCAATGGGACAATATCATTTTCAGAGACGAACAAAATCCCAGAAAAAGAGGTTTGAGGAGGAGCTGAATGAAAGAATGATTCGAACGATCGATGGCATAAACTCCCAAAAGCAATGGCTAAAGTCTGAAGATATTCAGAGGATATCATTGTTCTTTCATAATAAAACCCTTGAGAAGGAGAGCAACTACTTTGCCAGCTTTCAAGTATTACGTCACCTGTGCTTGCCtaatttttttctgtatctTCGTAGTACAAATCCTAGTCTTGCCAAACAGTGCAGCAAAACGGCCTCTACTTCGTGGCTTTGGATTCTGAGATCGTCTGGAATCCTGGCCAACAAACCCTGGCCTCGGATCACTCTCACTATGACAACGACTgccttaatattaataatggctGTATTTAATATGAACGTAGCCTACAGACGTGAGTCCCACTACATGATATTTTTCTTAGATGACAGTGTTTCATCTCCTGTCCCTGTATTTAATACATCTAATGAAACCTTGTATTACTCCAATGGACAAGCACTTCGTTTCCTAGAGAAGAATAATTTTTACCTTCCAAATGAATATTACTGTAGGTTAGACTTCCTCTGGAAGAACAAGTTCAAAAAGGAATGTGAGGAGATTGAGACCATGGAGAACCTCAACCGGGTGCTTCTGGAAAACGTTCTCCCCGCACACGTTGCTGAGCATTTCTTAGCCCGCAACTGGAAAAATGAGGATTTATATCACCAATCGTATGACTTGGTTTGTGTCATGTTTGCATCTATACCAGACTTTAAGGAATTTTACACAGAATCGGATGTCAATAAAGAAGGCTTGGAGTGCCTGAGACTATTAAATGAGATCATTGCAGATTTTGATGAGTTGTTATCCAAGCCGAAATTCAGTGGTGTGGAAAAAATCAAGACCATAGGCAGCACATATATGGCGGCAACAGGACTGAATGCTTCTCCCGGACCAGAGTATACACAGGAACATGACAGGCAGTACATGCACATTGGCACAATGGTGGAGTTTGCCTTCGCACTGGTGGGGAAGCTTGACGTTATCAACAAACATTCCTTCAATGATTTCAAACTCAGAGTTGGGATCAACCATGGTCCTGTGATTGCTGGAGTGATTGGTGCTCAGAAACCACAGTATGATATTTGGGGAAACACTGTGAATGTCGCCAGCAGGATGGATAGCACTGGAGTGCTTGGCAAAATACAGGTTACAGAGGAGACCAGCAAGATTTTACAGACTCTGGGATATATGTGCACATGCCGGGGAATAATCAATGTGAAGGGAAAAGGGGAATTGAAGACCTACTTTGTTCATACAGAGATGACCAGATCTCTTTCACAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155446 lncRNA downstream 350829 18782145 ~ 18782366 (-) True G123981
TU155412 lncRNA downstream 547265 18584709 ~ 18585930 (-) True G123961
TU155370 lncRNA downstream 663588 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 927063 18205668 ~ 18206132 (-) True G123876
TU155273 lncRNA downstream 1080863 18051097 ~ 18052332 (-) True G123845
TU155557 lncRNA upstream 123542 19283878 ~ 19284293 (-) True G124068
TU155687 lncRNA upstream 1141736 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 1379971 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 1818761 20979097 ~ 21116735 (-) True G124327
TU155898 lncRNA upstream 2486719 21647055 ~ 21678545 (-) True AMCG00002584
AMCG00002554 mRNA downstream 154238 18900273 ~ 18978957 (-) True AMCG00002554
AMCG00002555 mRNA downstream 237635 18871363 ~ 18895560 (-) True AMCG00002555
AMCG00002556 mRNA downstream 346241 18786673 ~ 18786954 (-) True AMCG00002556
AMCG00002557 mRNA downstream 346554 18786120 ~ 18786641 (-) True AMCG00002557
AMCG00002551 mRNA downstream 373609 18723397 ~ 18759586 (-) True AMCG00002551
AMCG00002559 mRNA upstream 11183 19171519 ~ 19174613 (-) True AMCG00002559
AMCG00002558 mRNA upstream 88294 19248630 ~ 19258630 (-) True AMCG00002558
AMCG00002563 mRNA upstream 173575 19333911 ~ 19351773 (-) True AMCG00002563
AMCG00002567 mRNA upstream 201999 19362335 ~ 19366244 (-) True AMCG00002567
AMCG00002566 mRNA upstream 234006 19394342 ~ 19403623 (-) True AMCG00002566
TU155250 other downstream 1143730 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 2293473 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 4186884 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 5478959 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 6103789 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 3925658 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 4021585 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 5101229 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 5131451 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 7143546 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029307 True 3718 mRNA 0.49 25 NC_007130.7 27609628 ~ 27776649 (-)
grasscarp (Ctenopharyngodon idella) CI01000054_09761729_09811401.mRNA True 3866 mRNA 0.46 26 CI01000054 9761290 ~ 9811633 (+)