RNA id: AMCG00002561


Basic Information

Item Value
RNA id AMCG00002561
length 2617
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00002561
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19130067 ~ 19133567 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTATCTCCACAAAGTGATAAAATGAATATGATGCACATTTTTATGTTCAGACTTCGCCCTGCACGTAGTATTCtattccaaaaatataaataaatcaaaaacaccaTAAAATTACACGGTGTATGTTTATTAGTTTATGTTAGCTCGTACTTCTGCTTCTACTTCTTCTCGTATGTTCTGCGACCTGCAGAGTGGAACAGCTGGCTCTTGCCACCAGCAGGACGTACGCAGTCTCCAGGTCGCGTTGgtgcagcgcagatgtccgcagatctgcgctgctcctcCAATGGGATCGCGGGATTTAGCAGACCTGCGCAGAAGGATCCAGTCACGGCCTTGTTTCCCAGCAACCGCAGGACGCCGGCCGCAGTGTGTATTTATCCGCAGCCGACAGTTCTTGGCCGGACATTGTTTTCGAGCGAgaaaaaaataccaacatgGAAACGATGCTGAAGACCACGACGGCACCTCTCTCCTCGCTGTCTGCCTTCAGCCACATCCCGCCCAGACGCACTGATCCCAAAGAGCTCACCTACTGTAACACTGCGCCCAAGGGCCGTGAAATCTTGACCTATGATTGCTTGTTTCGACGAGATGAAGGGTACAACGAGAAGCTGCATCGCGACGACAGAGAGCACGCCAAGAGCAGGGGTCTGGACGTACACACCGAGGAAAGGTCAAGACCTGTTCCGATTTTGTCCTCTTCAGAATATGGAAGACGTTTTCCCCTTGAGATATACAAACCAGGCCGCCAGTTTGTCCGAGTTGGAATCATCCGCTCGGAATTTTGCAGGAAAAATGGAATCCAGCGTTCAGTTGAGGAAGGCTATGGATCTGTCTCTCCTGCATAAAACTGTCTACTGATTGGAAACCAGTGTCTAAGAAACTTagatatatcaatataaaactgGAAATGCTCTGTGAAAAGAGAATGTGGGTGATTGCAtatgaataaaatcaaacaaacaagcaactgCATTATTACTAATATATCTAGTGGCTACAATGTTTTGTGTATGCATCTTAATTAGTGTATCTTATTAACCTTGAttgcaaacatatattttaacatacaaaGTTAAGTACTATAAAAAATATAGGAGATGAGGAGATCTTAGAACATGTACCAACATGTATTACCAACTGCTTAATAGTtttcttcagattttatttatgtatttacccAAATGTTGAAGAGAAGTTAAAGTTATAgcaaccatttatttattgtagttttctGCTTATTCAACTTATTTTTCCTAAGCATGTCAGAGAGCCATTAACagagaatatataaaatatatcatcATCAATTGTCTTAATCTTTACACTACTGGATGAAGAACTTCCCAAGCTTCCATGTTTCCATGTTTCTGATTTCATATATCCATTctgtataaaattgtattaaaaatctCTATCTGTCGGTCTATCTAGATGTATTTCTACCATTATAGTTTTGTAACATTGCATTTCAATCGGTTTTGCTTCATGACAAATTTAGATGAACACCCAGATTAAACGGGaaggcttttatttgtttatttatagatttactGTTTATTGTTGTAGCCCCAGTTAATGCAGAGAAATATTGCTGAATTGCAGTATTTGTATGGGCAATATATTGCTCTTTGCAAACCAATGTTTTACTGCCTTTCCGACCTTTAAGAGAAGGTgacattaattattcattttcccCAGAAGCTCCTCTCCTTACCGACTTTACATCACGGCCTAATTTGCTTGTATCTTAAAAGTTAGCATGCTACTAAGGGTACATTTGTATTAGTCTGATGATGTTAATGGCTCttttggaaaagagaaaaatgtgttCAACTGTATGTTGTATTTCCTCCCCTTCACTTTcagtttcaaattattatttaatcaagaaacatttaaaaaagtgtgaaatacatataaacctTTAATGAATaagtttttacaaaacaatggcgttaaaacatgaacacattttttaaattgttttattttttttagaaaactgCTGACTTTCTTCTGTACGTATACTCTGTGCAGAATCCAGAGCACTCTCAGAATACGTCACTGCTCGTGAAAAAGAAACAGTACCACTTGTAAATACATCCAAGATTTCGTGCATCTAAGGACAGACTTGAGCTATTTACAGATGCTGTGGTTTCAATGTTTCCAGTCCCCAATGGGATTCAGAGAGTTGGTCCTTTGCCCAGTCCGGATGTGCTGTTTCAAGGCATTACATTCCCTTGTGAAAGAGATCTGGTCATCTCTGTATGAACAAAGTAGGTCTTCAATTCCCCTTTTCCCTTCACATTGATTATTCCCCGGCATGTGCACATATATCCCAGAGTCTGTAAAATCTTGCTGGTCTCCTCTGTAACCTTAAGCAGAAGAGAAGTTTTTTGCAATCATAATATCGGGTTACATTAAATCCAGTTTGCAGTATTCGTTCCAAAAATTCACTTGCAAATTTGAACATCTGTAAATACTGTTTACAACTCAAATGATATGCTGTGGAAAACCTAACAGATGGCAGGATGGTTTGAAAGGCAACtgtaaaaaaatgcagaatatttaACTTGACATGGTAGTGGCAGATGTgaaaataagaaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155524 lncRNA upstream 42912 19086135 ~ 19087155 (+) False AMCG00002562
TU155521 lncRNA upstream 46264 19082663 ~ 19083803 (+) False AMCG00002562
TU155467 lncRNA upstream 266102 18862678 ~ 18863965 (+) True G123997
TU155463 lncRNA upstream 268423 18844368 ~ 18861644 (+) True G123993
TU155399 lncRNA upstream 544040 18584169 ~ 18586027 (+) True G123950
TU155556 lncRNA downstream 150311 19283878 ~ 19284277 (+) True G124067
TU155559 lncRNA downstream 200232 19333799 ~ 19384234 (+) True G124070
TU155588 lncRNA downstream 257556 19391123 ~ 19394724 (+) True G124094
TU155657 lncRNA downstream 1027980 20161547 ~ 20161753 (+) True G124150
TU155676 lncRNA downstream 1107018 20240585 ~ 20240879 (+) True G124165
AMCG00002562 mRNA upstream 2120 19073693 ~ 19127947 (+) True AMCG00002562
AMCG00002553 mRNA upstream 319688 18799860 ~ 18810379 (+) True AMCG00002553
AMCG00002546 mRNA upstream 671277 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002540 mRNA upstream 783869 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002534 mRNA upstream 968503 18145212 ~ 18161564 (+) True AMCG00002534
AMCG00002565 mRNA downstream 233749 19367316 ~ 19385301 (+) True AMCG00002565
AMCG00002564 mRNA downstream 273491 19407058 ~ 19410399 (+) True AMCG00002564
AMCG00002571 mRNA downstream 896591 20030158 ~ 20033860 (+) True AMCG00002571
AMCG00002572 mRNA downstream 1096160 20229727 ~ 20238940 (+) True AMCG00002572
AMCG00002573 mRNA downstream 1108281 20241848 ~ 20333030 (+) False AMCG00002573
TU155458 other upstream 291536 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 1145337 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 2169985 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 6000370 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 6068382 13058073 ~ 13061685 (+) False AMCG00002388
TU155679 other downstream 1140522 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 3934557 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 4019081 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 4544368 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 5288685 24422252 ~ 24422613 (+) True G124863

Expression Profile