RNA id: TU155521


Basic Information

Item Value
RNA id TU155521
length 414
lncRNA type sense_over
GC content 0.44
exon number 3
gene id AMCG00002562
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19073693 ~ 19127947 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAATTTGAGGTCCTGTACCATAGAGGGTGGCTCACACAGattGAGATTGCTAAAGCAGGCCTCCAAGCATCCCTTCTGGTAAAATCCCCCGAAACCAGCTATTTGTTTGTGAACTTTGACCCCCAAATACTCACTTTAATTCGGGAGACGGACTGCATGACTAAAATGGGTCTTGAAATTCCTCCGTTTGCTGCCACCCTTCAGCAAAAACAGGACCTCTTTAAGAAGAACTACAACAAACTACAGATGGTTCTTGCAGAGAACACCAGAGTGAGGTCAAAAATCCACACTGCCTATGAACAGCTTGTTGTGCCCCATTTAGCTAAGGTGGATGAAGCCATACAACCAGGTTTAACGTCCCTCAACTGGACTTCcttaaacattgaaaaatatataaatggaatCATCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155467 lncRNA upstream 218698 18862678 ~ 18863965 (+) True G123997
TU155463 lncRNA upstream 221019 18844368 ~ 18861644 (+) True G123993
TU155399 lncRNA upstream 496636 18584169 ~ 18586027 (+) True G123950
TU155389 lncRNA upstream 526101 18554485 ~ 18556562 (+) True G123943
TU155357 lncRNA upstream 572889 18504888 ~ 18509774 (+) True G123916
TU155524 lncRNA downstream 2332 19086135 ~ 19087155 (+) False AMCG00002562
TU155556 lncRNA downstream 200075 19283878 ~ 19284277 (+) True G124067
TU155559 lncRNA downstream 249996 19333799 ~ 19384234 (+) True G124070
TU155588 lncRNA downstream 307320 19391123 ~ 19394724 (+) True G124094
TU155657 lncRNA downstream 1077744 20161547 ~ 20161753 (+) True G124150
AMCG00002553 mRNA upstream 272284 18799860 ~ 18810379 (+) True AMCG00002553
AMCG00002546 mRNA upstream 623873 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002540 mRNA upstream 736465 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002534 mRNA upstream 921099 18145212 ~ 18161564 (+) True AMCG00002534
AMCG00002535 mRNA upstream 1031747 17998046 ~ 18050916 (+) True AMCG00002535
AMCG00002561 mRNA downstream 46264 19130067 ~ 19133567 (+) True AMCG00002561
AMCG00002565 mRNA downstream 283513 19367316 ~ 19385301 (+) True AMCG00002565
AMCG00002564 mRNA downstream 323255 19407058 ~ 19410399 (+) True AMCG00002564
AMCG00002571 mRNA downstream 946355 20030158 ~ 20033860 (+) True AMCG00002571
AMCG00002572 mRNA downstream 1145924 20229727 ~ 20238940 (+) True AMCG00002572
TU155458 other upstream 244132 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 1097933 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 2122581 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 5952966 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 6020978 13058073 ~ 13061685 (+) False AMCG00002388
TU155541 other downstream 46600 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 1190286 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 3984321 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 4068845 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 4594132 23677935 ~ 23681385 (+) True G124769

Expression Profile