RNA id: TU155524


Basic Information

Item Value
RNA id TU155524
length 221
lncRNA type sense_over
GC content 0.45
exon number 3
gene id AMCG00002562
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19073693 ~ 19127947 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCTGAAACGAGACAGCAGAGACAGCGACTCTGAGGATGGGGAAGCTACGTACAGAAGTGTTGCTGattgCAGTACATCTGACATCTCTGCCTCCATGAATCACGCTATCCCCTTTCAAGCCAGAAACTATTACAAGAGTGTGtctgaaaacaaggaaattgtGAAGCTGATGTCTGTCTTGAGCACATCCATTAATTCAACTAAAAAGGAGGTTATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155521 lncRNA upstream 2332 19082663 ~ 19083803 (+) False AMCG00002562
TU155467 lncRNA upstream 222170 18862678 ~ 18863965 (+) True G123997
TU155463 lncRNA upstream 224491 18844368 ~ 18861644 (+) True G123993
TU155399 lncRNA upstream 500108 18584169 ~ 18586027 (+) True G123950
TU155389 lncRNA upstream 529573 18554485 ~ 18556562 (+) True G123943
TU155556 lncRNA downstream 196723 19283878 ~ 19284277 (+) True G124067
TU155559 lncRNA downstream 246644 19333799 ~ 19384234 (+) True G124070
TU155588 lncRNA downstream 303968 19391123 ~ 19394724 (+) True G124094
TU155657 lncRNA downstream 1074392 20161547 ~ 20161753 (+) True G124150
TU155676 lncRNA downstream 1153430 20240585 ~ 20240879 (+) True G124165
AMCG00002553 mRNA upstream 275756 18799860 ~ 18810379 (+) True AMCG00002553
AMCG00002546 mRNA upstream 627345 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002540 mRNA upstream 739937 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002534 mRNA upstream 924571 18145212 ~ 18161564 (+) True AMCG00002534
AMCG00002535 mRNA upstream 1035219 17998046 ~ 18050916 (+) True AMCG00002535
AMCG00002561 mRNA downstream 42912 19130067 ~ 19133567 (+) True AMCG00002561
AMCG00002565 mRNA downstream 280161 19367316 ~ 19385301 (+) True AMCG00002565
AMCG00002564 mRNA downstream 319903 19407058 ~ 19410399 (+) True AMCG00002564
AMCG00002571 mRNA downstream 943003 20030158 ~ 20033860 (+) True AMCG00002571
AMCG00002572 mRNA downstream 1142572 20229727 ~ 20238940 (+) True AMCG00002572
TU155458 other upstream 247604 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 1101405 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 2126053 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 5956438 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 6024450 13058073 ~ 13061685 (+) False AMCG00002388
TU155541 other downstream 43248 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 1186934 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 3980969 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 4065493 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 4590780 23677935 ~ 23681385 (+) True G124769