RNA id: AMCG00002563


Basic Information

Item Value
RNA id AMCG00002563
length 4831
RNA type mRNA
GC content 0.44
exon number 12
gene id AMCG00002563
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19333911 ~ 19351773 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCATATTGGATCGCTGTAGTGTTTCACAGTTTAGAGTCTTTAGGATTAGCAGTCCCCGGTTCCCTTTGGGTTTTAGCGCTTACTttctgggtttatttttttaaatggggttGACTCGCGAACGCTAAAGGACCCTGCACGCGTGGATTTTAACAGACAAAGGGGATTTGGAGAAGAAAGGGGTTGTTGAAACAGAAGTTGAATGGATCCGAGGGTAGCTTGGATTCAGCCCGAACAGAAAGGACCTGCTAATGCCTTGTGGATGCATATCTGGGAGACCTCTCAGGCACCTCGGACAAACTCCCACCACCgccaccatcaccatcacctaTGTGTCAACTCGCCGGCTGTGGACCCCAGCCCTTTTAACAATGTAGCAGCCGCGGTTCCCAGCAAAAGCATGGGCAGCCATCACAGTGCTGGAAGCAGTAGGACCAGTGGGGTTATCTCTCCTGCCAGTCTCTCTCGCAGCAGCACCCACCCAGCCCTGCTCTCCTCCACCGGTGCCGGATTACAGGTAGGCGTGGGAGAGGGAAACCCACGGTTGCAAAAGACCCCCTCCGTGTCGTCCTCTTCCTCGGTGGAGTCGGGGACGGAGAGCCCTTCTTCCAACTCCTCTTCGGGAAGGACTAGTTGTGGTGTTAGTGGTCCTGCTAACATTAATAAACCCGCCGGCGGTGGCAACCTGTTTTTCAGTTTCGGCGAGAACTTGTACAATGTCAATCATCACAGCAATCGGCAGCATCAGCAGCAAGAGCAACTCCAGCACCACCTCCAACAAAACTACTACAGGCGCCACCATGATCACAACAGCACTACCACATCGATCAACAACCATCACAACCACCATCCAGGCCGGAGGAAAAGTGACAACAAGGCGAGCACATATGGGATCAACTATCTGCTCTCGAACTGTTGGAATGGGAACTATGTCTGCTCTGGGACTCCGTGGAAAACCCGAAAATATAGTCCGGGAGTCAATGGCCTCCACGAAGAGATAGTGGAGTTCTATGATTTCATGTCTCCCCGTCCTGAAGAAGCAGCGATGCGGAAAGAAGTGGTGAACAGAATAGAAACGGTTATCAAAGATCTGTGGCCTACAGCTGATgttCAGATTTTTGGCAGCTTTAGTACTGGACTTTATCTCCCAACAAGTGACATTGACTTGGTGGTCTTCGGGAAATGGGAACGTCCCCCTCTGCCCCAGCTGGAACAAGCACTACGGAAACACAATGTGGCTGAGCCTTACTCCATTAAAGTACTTGACAAAGCAACGGTACCAATAATAAAGCTCACTGACCAagaaacagaagtcaaagtggataTCAGTTTCAACGTAGAAACTGGTGTGAAAGCAGCTCGGTTCATTTCGGAGTACCTTAAGAAATATACAGTGCTGCCTTATTTGATTTTTGTACTGAAGCAGTTCCTGCTACAGAGGGATTTGAATGAGGTTTTTACGGGTGGGATTAGTTCTTACAGCCTCATTTTAATGGCCATTAGCTTCCTACAGttgCACCCAAGAATTGATGCCAGAAGTCCCAATGTGAATCTTGGCATTCTTCTCATTGAATTCTTTGAGCTGTACGGAAGGCATTTTAACTACTTAAAAACTGGTATTCGTATCAAAAATGGAGGTGCTTATGTTGCCAAAGAAGAAATCATGAAAGCCATGACCAACGGGTATAGGCCGTCAACGTTGTGCATTGAAGATCCTCTCTTGCCAGgaAATGATGTGGGCAGAAGTTCCTATGGTGCCATGCAAGTGAAACAAGTCTTCGATTATGCTTATATCGTGCTTGGTCATGCCGTTTCCCCACTTGCAAGGTCGTACCCCAACAAAGAGTCTGAGAGCACTTTAGGTCGGATAATTAAAGTCACCCAGGAAGTGATTGATTATAGGGAATGGATCATTAAGAAATGGGGTGTGAGGAACTGCCCAAGGCCAGATTCATACGGTCCCAGAATGATCCAGGGCCCAGAGCCGACCGAACACGGCAGCCTGACTCTGCTTGGAGAGCAGCAACAGCATCAGCGTGATTCAGTTTCCCCCAATAGCGTGGACTCCCCCATGTCTTTCTCCAGCCCCCAGCAGCACTCGTCCGGCTCCTCGGCATCCTCCGTCTCCTCTCTCTCGGGCAGTGACATCGCCAGACTGTCCCTTTCTGGAAACCTAGGTGTTCCTTCACTGCCTGGCAGACAGGTTTGTATAGAAGGGACACCTTTGAATGCTGTCCTACACATGCCCCCTCCTGCTgtcccccccgcctcccccagCCCTCTGCAAAGCCCCCACCTGCATCACAAGATGCAGAATGCGCCAAAATATTCCATGAAGGGACTACATAATCCAGGCACTGTCCACACTCCCATGGTGGGAATGAAACAACCCATTAACAACCGGGGGCACCCCCAGTACAACCGCAGCAGCTGGCGTCGGAGGAAGCACACCAGGGAGAGTTTACCAGTCAGCCTAAGCAGATAAGGTTGCCTCCCCATCTTGAAGCTGGAGTTAAGTGACCTGCAATTTTTACAGTTGCCAGACAGTGGAAAAAGACCAGCATTCAATACTTCAGCCTGTAGGTAGTAACACTACGAATCTGCAGCTGTTTCTTTGCATGTTTCCTGTACGATGGTCAGAAACCCATCTTGCAGATAATATTGTTCAGTGCTGAATCTGTGAAGACTTGTTTggatgtaaatgttttgttttgttcagtgttatgtttctttttgttagttttttacatttgtttttgctttgcttggGTTTTCGGCCCCGTTTCATCACCTAGTGCTGGAAGTGGCTCTTTTTCAAGACTTGCCAGAGCTCAGAAGCAACTTTGCTTGAACCGGTTACAGAGGAGTGGCAAGTTTGCAAATGCAGCCCTCCTTTCAGCGATGGCCTGGCCCAAAACTACCGACAGAGCTGCCTCCTTTTTTTCATATCCatagtaaacattttacaatgtacaaaAGTAACAAATTGTTTATCATTTGTGCAATAACTTTTTTCAgaaattggttttatttaagtGTGTAATAGGGATGTTTTAAGttatattgttttggttttattttgtttgtttttgttcaatcttttttttctccttcaagTTTACAAATCCTTTCCCGGGTTGCGTTCTTTGCAGGTCTGTTTTAAATTGAGCTGTGCGTTGTTGAAAACTGTAATAGGACTCCCCTTTTAATGATGGGTAAACCAGAGGCAAACTGAGACCTGAAAGCCTGTCCCACAACTCCCACAGAAATGGCTTGAGGGCTGTTCCTCACCAGGTGGAGCTGTTGCGAAAGGAATGTTGCACCACACGCTCGAACTGCTAAAATGAATGTCTTTTGACCCAGTTTTAAGAAAAGCcctggtttgattttttttctttttttattgaattaaaaatgttcccatttgtgtctctctctctctctctctcccccgtgCTGtcggtttttatttatttattcttttgtgGTGATGCACCTGTCCCATCCTGATGGTCAATTCATTTGGGGAATCTGTTGGTTTCCCCTGAAGCGATCCTCACAAATCGCACTTGTGCTAACCCCTCTGTTTCTCTAGTCCTCTGAGAATAGGCCAGCCCCGTttggttattttctttcttggtGGATTATCAGAGCTCTCTTAGCTCGACCACTGAGTTTCAAGATCGATGCTATGGTTAAAAAtctagtgttttttgttttttatttatttagttttaagaaACAGAGGAAAAGGGGAGTCTATTGAAGGTAGAGAATCGGTAGTAGATTTAAATCAGTGTTAATTTATGTAACCTGTGTTTATGCAAGGTGCCCCAAGAAAGCATTTGCTCCATGGGTGCCCACTTTATCAGAATGTGGAGAAAGGAATTATTTTTGATTCCATTCTGGAATCTGTATAGCAGTATGCATTCGTTCTGTTAAGAGCAACACATtcgaaacaaacaaaaaaaaactacaaaaaaaaacaactgaaaaaaaatagaaaaaaacacacaaaaaaaataccaaGTACTTCCATTGCTGTATGCATTGCctgaagtatttttttacagtattgCATCGTGGTGCAGCAAATATATGGCGCACAAACTGTATTGCTGTCACTTAAACGTTACTGATGCATACAGGTATACTATgcaagtggattttttttttttctcttctcctctcctcgtGACAACCACTGCTCGTGAGCTTTTCAAACTAAGGTTATTGCCTGACCCGAGTCTGAAAAGCACCATGGTTGTCCCAACTTATTATTCACAATGATACATGATACCAGTATTATGAATGTTTaaagtcaaatgttttaaaacagaggTCCTTTTTCTCAACAAATACTATAAGGGAATACATCTCCTAACAGTGATCGAAATGTATGTTAAGATGCATTTCTGTAGTCTTCAGAAGGTAGCTTAATTTAACAAGGTTGAGATTTATACTGTATTGAAAGCATTTCTTTAAACCTACTTTTAGCAGCTAAAACAAGCCGACTGCCACATAGCCTGTTATATGCAGTTACGTGTTTAGTTTTCACTTATTTCACATTCCATTGTAGAGTAGTGCTTAACAGTGCTCTACATAACCATGTGTCATTTTATTGGTAGGGAGAACCAAGCAAAAACTGGAGTGAATTAGACCCAAGTGGAAAAAGATATACCTGCTGTTGTATTAATGGATTTAACTAAGCTAACATAAACGAGTCAACCCAAAACCATGCTTTACGTTTATGCGTCAATGCAGGCTTTTAAATTTGGCTTTTGCGGTTTCGGTCTTTAAGTGTGGCAGGCAGTTTAATACTAGAGGCTT

Function

GO: NA

KEGG:

id description
K03514 PAPD5_7, TRF4; non-canonical poly(A) RNA polymerase PAPD5/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155557 lncRNA downstream 49618 19283878 ~ 19284293 (-) True G124068
TU155446 lncRNA downstream 551545 18782145 ~ 18782366 (-) True G123981
TU155412 lncRNA downstream 747981 18584709 ~ 18585930 (-) True G123961
TU155370 lncRNA downstream 864304 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 1127779 18205668 ~ 18206132 (-) True G123876
TU155687 lncRNA upstream 950299 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 1188534 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 1627324 20979097 ~ 21116735 (-) True G124327
TU155898 lncRNA upstream 2295282 21647055 ~ 21678545 (-) True AMCG00002584
TU155935 lncRNA upstream 2443000 21794773 ~ 21794988 (-) True G124402
AMCG00002558 mRNA downstream 75281 19248630 ~ 19258630 (-) True AMCG00002558
AMCG00002559 mRNA downstream 159298 19171519 ~ 19174613 (-) True AMCG00002559
AMCG00002560 mRNA downstream 173575 19133195 ~ 19160336 (-) True AMCG00002560
AMCG00002554 mRNA downstream 354954 18900273 ~ 18978957 (-) True AMCG00002554
AMCG00002555 mRNA downstream 438351 18871363 ~ 18895560 (-) True AMCG00002555
AMCG00002567 mRNA upstream 10562 19362335 ~ 19366244 (-) True AMCG00002567
AMCG00002566 mRNA upstream 42569 19394342 ~ 19403623 (-) True AMCG00002566
AMCG00002568 mRNA upstream 130093 19481866 ~ 19493271 (-) True AMCG00002568
AMCG00002569 mRNA upstream 171079 19522852 ~ 19543805 (-) True AMCG00002569
AMCG00002570 mRNA upstream 486611 19838384 ~ 19843617 (-) True AMCG00002570
TU155250 other downstream 1344446 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 2494189 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 4387600 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 5679675 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 6304505 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 3734221 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 3830148 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 4909792 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 4940014 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 6952109 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029309 True 1752 mRNA 0.52 13 NC_007130.7 27807415 ~ 27830818 (-)