RNA id: AMCG00002565


Basic Information

Item Value
RNA id AMCG00002565
length 2389
RNA type mRNA
GC content 0.49
exon number 19
gene id AMCG00002565
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19367316 ~ 19385301 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTGTCTGCGTATCCAACATGGGGAAAAGGAACAGAAACAAGCAGAGAAATCAAGACAAGAATGGAAACCCTGCAGGAAGAAGCAGAGACGATGCTGGTTGGGGTGCTGGGTATACAGAAAtcaacaaggaaaacaaactgtttGAACAGTATTACCAAGAGCTTAAGATTGTTCCCGAGGGAGAATGGGAGCAGTTTATGGAGGCACTGAGGGAACCCTTGCCAGCAACTATAAGAATAACAGGATACAAAAGCCATGCCAAAGAAATCCTCCATTGTTTAAAGGAGAAGTATTTCAAGGAAATACAAGATCTTGAAGTGGACGGCCAGAAATTAGAAGCTCCTCAAGCACTGAGCTGGTACCCCGACGAGCTTGCGTGGCATACAAACATGAGCAGAAAGATTCTGCGCAAGTCCCCTTTGCTGGAAAAGTTTCACCAGTTCCTGGTTAGCGAAACAGAATCTggTAATATTAGTCGTCAAGAGGCTGTCAGCATgattcctcctcttctcctgaAAATTGAACCTCATCATAAGGGGTTTGTCATTGCCAATGATGTGGACAACAAGCGCTGCTACCTGCTGGTTCACCAGGCAAAGAGATTAAACAGCCCTTGCATTATGGTTGTGAATCATGATGCCTCCAGCATTCCCCGACTTCAAATTGAGTGTGGGGGCAAAaaggatattttgttttatgaccGAATTCTTTGTGATGTTCCTTGCAGTGGCGATGGGACGATGAGAAAGAATATTGACGTGTGGAAGAAGTGGTCAACGAGCAACAGCCTTCAGCTTCACGGACTGCAGTTGAGGATCGCAGTCCGCGGTGTGGAGCAGCTGGCTGTTGGAGGAAGGATGGTCTACTCCACTTGCTCCCTGAACCCTGTTGAGGATGAAGCTGTAATTGCATCACTGCTGGAGAAGAGTGAAGGTGCCTTGGAACTTGCAGATGCCTCCAGTGACTTGCCAGGGTTGAAGTGGATGCCAGGGATGACATCCTGGAAGGTAATGACGAGAGCGGGGGAGTGGTACGCAGATTGGTCTGAAGTTCCTCAAAGTCGGCACACACAAATTCGACCAACGATGTTTCCTCCTGCAGACGCAGAGAAATTGAAAGCAATGAATCTAGAGAGATGTATGAGGATATTGCCCCATCACCAGAATACGGGTGGGTTTTTTGTGGCGGTACTTGTGAAGAAAGATCCCATGCCTTGGAATCGCCGGTTTCCCAAGGAATATCATCACAAAACCTTCTCTTTGTTGTCGGGCCCTGTCCTGTGCTCATCCCTGCGCCCCCGTTTTGCATATCCTCACCAGCTCCGTGGCAAAGCAGCAGAAGCGGTCGGTGCAGCCGAGGAGATTCCTGCCGAAACTGCTGATGAAGGAGGAGAGGCGGCTGCAGAGGACAAACCCAAAGACCTTGAGGACTCCCAGGAGAGCTCTGTCAAAAAAGATGGAGTGTGTGGTCCTCCACCATCAAAAAAGATGAAGCTGTTTGGCTTCAAAGAAGATccctttgtgtttctgtctgagGATGATCCCGTGTTCTCCCCAATCCAGAAATTCTACAACCTTTCCCCAACCTTCCCGAAGTTCAATGTACTGACCAGGACCCATGAGGGTAAGAAGAGACATCTGTACATGGTCTCCAAAGAGCTCCGAAATGTCCTGCTCAACAACAGTGAACGCATGAAGGTTATTAACACAGGAGTGAAAGTTTGGTCTCGCAATAATGACGGAGAACAGTTTGGCTGTGCCTTCAGGCTAGCCCAGGAGGGCATTTATACACTCTTTCCTTACATTAATGCCAGAATCATTAACATTTCTGTTGAAGATATCAAGGTACTGTTAACGCAAGAGAATCCCTTCCTTAGCAAACTGGAAAATGAAGCGCACGAACAAGCCAAGAAGTTGTCAATGGGCAGCCTTGTTCTAAGATACCAACCCGACACAcaGAACGCAGCATCTCCGCAGTGTCCCATTGAACTGTGTGGCTGGAGAGGGAAAACCTCTATTCGCGCTTTTGTCCCCAAGAACGAGCGCTTTCACTATCTGAGGATGCTGGGGGTGGAGGTGTTCCGGGAGAAGATCCGAGGGGGCCCCGTGGATGGGAAAACTGCAGGGGAGCCGGAGATTGGGGAGCCGGGTGAGATGCCCACCGTCGAGGACTCTGGAGAGGTGGAGTGCGAGGGGGACAAGGGGGCGGAAGCGAAGCCCGAAGCACCGGAGCTGGATGGGGAGGAGGTTATGGAAGCGGAAGACTCTCCTGCTGAATGTACtgcagaaaacaatgaaaaagtgGTCACTCCTGAAACTGTAGGCCTGCAGCAGTCTCTTTTACGATATGAAACTCTCCCATTCTTTTATATCGAGACTAGGAGCTAC

Function

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0016428 tRNA (cytosine-5-)-methyltransferase activity molecular_function

KEGG:

id description
K15335 NSUN2, TRM4; tRNA (cytosine34-C5)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155556 lncRNA upstream 83039 19283878 ~ 19284277 (+) True G124067
TU155524 lncRNA upstream 280161 19086135 ~ 19087155 (+) False AMCG00002562
TU155521 lncRNA upstream 283513 19082663 ~ 19083803 (+) False AMCG00002562
TU155467 lncRNA upstream 503351 18862678 ~ 18863965 (+) True G123997
TU155463 lncRNA upstream 505672 18844368 ~ 18861644 (+) True G123993
TU155588 lncRNA downstream 5822 19391123 ~ 19394724 (+) True G124094
TU155657 lncRNA downstream 776246 20161547 ~ 20161753 (+) True G124150
TU155676 lncRNA downstream 855284 20240585 ~ 20240879 (+) True G124165
TU155690 lncRNA downstream 974022 20359323 ~ 20359695 (+) True G124178
TU155746 lncRNA downstream 1176321 20561622 ~ 20562263 (+) True G124232
AMCG00002561 mRNA upstream 233749 19130067 ~ 19133567 (+) True AMCG00002561
AMCG00002562 mRNA upstream 239369 19073693 ~ 19127947 (+) True AMCG00002562
AMCG00002553 mRNA upstream 556937 18799860 ~ 18810379 (+) True AMCG00002553
AMCG00002546 mRNA upstream 908526 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002540 mRNA upstream 1021118 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002564 mRNA downstream 21757 19407058 ~ 19410399 (+) True AMCG00002564
AMCG00002571 mRNA downstream 644857 20030158 ~ 20033860 (+) True AMCG00002571
AMCG00002572 mRNA downstream 844426 20229727 ~ 20238940 (+) True AMCG00002572
AMCG00002573 mRNA downstream 856547 20241848 ~ 20333030 (+) False AMCG00002573
AMCG00002574 mRNA downstream 985242 20370543 ~ 20396006 (+) True AMCG00002574
TU155541 other upstream 234958 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 528785 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 1382586 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 2407234 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 6237619 13125378 ~ 13129697 (+) True AMCG00002393
TU155679 other downstream 888788 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 3682823 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 3767347 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 4292634 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 5036951 24422252 ~ 24422613 (+) True G124863

Expression Profile