RNA id: AMCG00002566


Basic Information

Item Value
RNA id AMCG00002566
length 906
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00002566
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19394342 ~ 19403623 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTACTCTTCTCCGGAAAATAGGTCTGATCCGGCTGCACGACCGAGACACGGAGGACCCCAAACACCACCAGGGCTCGTTCAAGGGGAGCAAGGGCaaccagaaaaacaacaacatcaaataCTGCAACACCAGCAACGACAGCAGCAACATCCTCAACCCCCCCGAGATCAAGGCCAAGAAAACGGAGCCATCCAGTAAGGACAAGCCAGTTGGCAAGGACAAGCAGGGCAAGGACCTCAAGGAGAAGCAACCAGTAGGAGGCAGCAAGGCGAGCAGCACCTCGTTGCCACCCCTGGTGCCCCACCGGCAGCACTGCACCCAGGTCAGGACGAGGAGGTTGAtgaaggagctgcaggagaTCAAGAGGCTGGCTGACCACTTCATCACGGTGGAGCTGGCCGACGACAACCTTTTCGAGTGGAATGTCAAATTGCACCAGGTGGACAAGGACTCGGCGCTCTGGCAGGACATGAAGGAGACCAACACCGAGTATATATTGCTGAACATCTCTTTCCCCGACAATTTCCCCTTCTCCCCGCCTTTCATGCGGGTGCTGACCCCCAGGCTGGAGAACGGCTACGTCCTGGACGGAGGGGCCATCTGCATGGAGCTGCTGACCCCCCGCGGCTGGTCCAGCGCCTACACGGTGGAGGCGGTGATGAGACAGTTCGCCGCCAGTCTCGTCAAAGGACAGGTGAGACCCGCTGGTGCTTTGCGCCGTCTTTGCGTGCCAACTTGGCCGACGCTTAAGCTGCCATCTGCCGTGCTGGGCCGCATCTGCAGGAAAGCTGGCAAATCGAAGAAAGCCTTCAGTCGCAAAGAAGCGGAGGCCACCTTCAAGAGCCTGGTGAAGACCCACGAGAAATACGGCTGGGTGTCCCCTCCCGTGTCCGACGGCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10582 UBE2Q; ubiquitin-conjugating enzyme E2 Q

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155557 lncRNA downstream 110049 19283878 ~ 19284293 (-) True G124068
TU155446 lncRNA downstream 611976 18782145 ~ 18782366 (-) True G123981
TU155412 lncRNA downstream 808412 18584709 ~ 18585930 (-) True G123961
TU155370 lncRNA downstream 924735 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 1188210 18205668 ~ 18206132 (-) True G123876
TU155687 lncRNA upstream 898449 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 1136684 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 1575474 20979097 ~ 21116735 (-) True G124327
TU155898 lncRNA upstream 2243432 21647055 ~ 21678545 (-) True AMCG00002584
TU155935 lncRNA upstream 2391150 21794773 ~ 21794988 (-) True G124402
AMCG00002567 mRNA downstream 28098 19362335 ~ 19366244 (-) True AMCG00002567
AMCG00002563 mRNA downstream 42569 19333911 ~ 19351773 (-) True AMCG00002563
AMCG00002558 mRNA downstream 135712 19248630 ~ 19258630 (-) True AMCG00002558
AMCG00002559 mRNA downstream 219729 19171519 ~ 19174613 (-) True AMCG00002559
AMCG00002560 mRNA downstream 234006 19133195 ~ 19160336 (-) True AMCG00002560
AMCG00002568 mRNA upstream 78243 19481866 ~ 19493271 (-) True AMCG00002568
AMCG00002569 mRNA upstream 119229 19522852 ~ 19543805 (-) True AMCG00002569
AMCG00002570 mRNA upstream 434761 19838384 ~ 19843617 (-) True AMCG00002570
AMCG00002579 mRNA upstream 865937 20269560 ~ 20274450 (-) True AMCG00002579
AMCG00002580 mRNA upstream 955934 20359557 ~ 20365199 (-) True AMCG00002580
TU155250 other downstream 1404877 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 2554620 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 4448031 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 5740106 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 6364936 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 3682371 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 3778298 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 4857942 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 4888164 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 6900259 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029314 True 840 mRNA 0.57 2 NC_007130.7 27957208 ~ 27966780 (-)
grasscarp (Ctenopharyngodon idella) CI01000054_09652700_09656625.mRNA True 1072 mRNA 0.56 2 CI01000054 9652572 ~ 9656747 (+)