RNA id: AMCG00002567


Basic Information

Item Value
RNA id AMCG00002567
length 729
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00002567
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19362335 ~ 19366244 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGAATATATTGTTCTACCTCTTTGGCTCCGAGACAAACGAGCAAAGCATCCTAGAGAACATGTCTTATGTGATGCTCTTGATGGGGGGTGTAACgtttttaattttactcttTGAAAACGTGCCCTATGGCAGGTATGCTTCAAAGAGGTACGGCTTCCCGGTTAATGTCAAATTCGCCTGGTTTGTGCAAGAGATGCCTGCCTTGGTCGTTCCGCTCTTGCTATTATTGACTACCTCTGCTGCAAGAGCCTCTTATTTACCCAACCGGCTGCTCATCGCAATGTATCTGTGCCACTACCTTCAAAGgtcGCTGATTTACCCCTTCTTAATACGAGGAGGAAAACCGaccccctttctttcttttgcaagtgcatttgttttctgtgtgttcaATGGATATCTACAAGTAAGATACTTGAGCCACTTTGCAATGTACCCTGCAGAATGGATAACACAGCCATGCTTTATCCTAGGATTCATAATGTGGTTAATGGGGATGCTGATAAATATACACTCGGATCATATTCTTAGAAATCTCAGAAAACCTGGAGAAACGGACTACAAAATACCAAAGGGTGGCTTGTTTAGATATGTATCTGGTGCAAATTTTCTTGGCGAGATTATGGAGTGGGCTGGGTTTGCTGTGGCCTCTTGGTCAATTCAGAGTGCTTCCTTTGCCATTTTTACCTTGGTGGTGCTCTCCAGTCGGGCTGTTTCCCATCAT

Function

GO:

id name namespace
GO:0008202 steroid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity molecular_function

KEGG:

id description
K12343 SRD5A1; 3-oxo-5-alpha-steroid 4-dehydrogenase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155557 lncRNA downstream 78042 19283878 ~ 19284293 (-) True G124068
TU155446 lncRNA downstream 579969 18782145 ~ 18782366 (-) True G123981
TU155412 lncRNA downstream 776405 18584709 ~ 18585930 (-) True G123961
TU155370 lncRNA downstream 892728 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 1156203 18205668 ~ 18206132 (-) True G123876
TU155687 lncRNA upstream 935828 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 1174063 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 1612853 20979097 ~ 21116735 (-) True G124327
TU155898 lncRNA upstream 2280811 21647055 ~ 21678545 (-) True AMCG00002584
TU155935 lncRNA upstream 2428529 21794773 ~ 21794988 (-) True G124402
AMCG00002563 mRNA downstream 10562 19333911 ~ 19351773 (-) True AMCG00002563
AMCG00002558 mRNA downstream 103705 19248630 ~ 19258630 (-) True AMCG00002558
AMCG00002559 mRNA downstream 187722 19171519 ~ 19174613 (-) True AMCG00002559
AMCG00002560 mRNA downstream 201999 19133195 ~ 19160336 (-) True AMCG00002560
AMCG00002554 mRNA downstream 383378 18900273 ~ 18978957 (-) True AMCG00002554
AMCG00002566 mRNA upstream 28098 19394342 ~ 19403623 (-) True AMCG00002566
AMCG00002568 mRNA upstream 115622 19481866 ~ 19493271 (-) True AMCG00002568
AMCG00002569 mRNA upstream 156608 19522852 ~ 19543805 (-) True AMCG00002569
AMCG00002570 mRNA upstream 472140 19838384 ~ 19843617 (-) True AMCG00002570
AMCG00002579 mRNA upstream 903316 20269560 ~ 20274450 (-) True AMCG00002579
TU155250 other downstream 1372870 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 2522613 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 4416024 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 5708099 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 6332929 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 3719750 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 3815677 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 4895321 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 4925543 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 6937638 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile