RNA id: AMCG00002570


Basic Information

Item Value
RNA id AMCG00002570
length 1730
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00002570
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19838384 ~ 19843617 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAAACCACATGCTCCAAACTAGGAGGGGCTTGCAGCTCAAGTGGGATGCCAATCAAAGCATCAACTTCAAATTGTATCTGAGAGATCAGCCCAAGACCTAGGGGCAGACACATCAGTTGGAGCTCAATTGTTGATCTGATCACATCCAAGGGACTTGCTGCCAAAGACACAAGCCGAGATTGGAGAAGAGCAGAgtctattttttccccctgctttTGTGCTTGAGCACTTCCAGCTTgattttttggtgtgtgtgtgtgtatcctgTTTTTTGCTGTGACTTTGCTTCAGATCTGGTCGAGGAGATGTCTTTTCCCCAGCTGGGCTATCCTCAGTATTTAAGTGCCACCCAAGCGGTGTATGGAGGCGATCGGCCGGGAGTTCTGGCTGCCTCTGCCCGGGGAGGGAGCTCTGAAATCGGCGCCAATCCGTCCGCCACCGCGGCGGCAGTCACCTCGGTGTTGGGCATGTACGCAAACCCTTACGCAGCCCACAACTACAGCGCTTTCCTGCCTTACACCAGTGCGGACCTGGCTCTCTTCTCTCAAATGGGTTCCCAATATGAGCTGAAAGATAACCCAGAGGACGAGGATGGCAACATCTTCGGCAGCGACAACGAAGGCGACGCGGAGAAGAACGAAGACGACGAGGAGATCGACCTGGAGAGCATTGACATCGACAAGATCGACGAGAACGACGGCGACCAGAGCAacgaggaggacgaggagaAGCTGGACGCCCGGGACAGGGGGGACCTGGACAGTTTGGAGAAGAGACGCGCACTGAGCCTCCAGGCGCACGAAGGCTTTGACAAGTCCAAAGACGCCATCTCTGCAGCGAAAGACCCGTCTGAGAGCAATAACACCAGGGTGCTTTCTCCTGGCGGGCAGGGCCATTTCCAAGTGCCAGCAAACAATAAGCCCAAGATCTGGTCCTTAGCAGAGACAGCCACCAGCCCCGACAGCTCTCAGAAACCCACCTCGCCCTCTGCCCCCGCCAGCCACACGTCCCCCCAGATCCAGCACCCAGCTTTCCTCCCCAGCCACGGACTGTACACTTGCCAGATTGGGAAGTTCCACAATTGGACCAATGGCGCTTTCCTGAGCCAAAACTCCCTGTTAAACGTGAGGTCTTTTTTGGGAGTAAATCAGCATCACCATCATCACAATCATGCCCTCCATGCCCAGCAGCAGACATCTGGGGTCGTATCATCCGTCGCAGCACTGAACAGTGAGAAATCTCCAGAGAGCCTCAGTCCTAAACACATAGATCGGGAAAACGTTCAGAGGACCGAGTCTCCAACACAACCAATCAAATCATCGTTTCAACAAGTACACGACAGTCCCAGGAATCAACCAGAGGCAACACAGCGAGTTTTAACAGCTCTTTCTTCGGCCTGATCAAGATTATTTTGTCGGAAAAAggactgacaaaaaaaacaaaaaacaaaaaaaaacttaaaggacaaaatgaaacaaacaaacacaattccTCCTCCATGTAGCATTCAGCCGATGCAGAACAATTGAGTCGATTTGATCAAACTTGTGGATGGATTTTCCTTATTATTGTACCATTATCACATcctgtgttatatatatatttttttttcttgaacatcttgtattttgtctttcctgtgtttgtgcttttctttctgtaaatAGAGTGACCCTAAAATTGTAAATAGCGCGTCGACAGAATTTGtctaaatcatatatttttgtct

Function

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155557 lncRNA downstream 554091 19283878 ~ 19284293 (-) True G124068
TU155446 lncRNA downstream 1056018 18782145 ~ 18782366 (-) True G123981
TU155412 lncRNA downstream 1252454 18584709 ~ 18585930 (-) True G123961
TU155370 lncRNA downstream 1368777 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 1632252 18205668 ~ 18206132 (-) True G123876
TU155687 lncRNA upstream 458455 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 696690 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 1135480 20979097 ~ 21116735 (-) True G124327
TU155898 lncRNA upstream 1803438 21647055 ~ 21678545 (-) True AMCG00002584
TU155935 lncRNA upstream 1951156 21794773 ~ 21794988 (-) True G124402
AMCG00002569 mRNA downstream 294579 19522852 ~ 19543805 (-) True AMCG00002569
AMCG00002568 mRNA downstream 345113 19481866 ~ 19493271 (-) True AMCG00002568
AMCG00002566 mRNA downstream 434761 19394342 ~ 19403623 (-) True AMCG00002566
AMCG00002567 mRNA downstream 472140 19362335 ~ 19366244 (-) True AMCG00002567
AMCG00002563 mRNA downstream 486611 19333911 ~ 19351773 (-) True AMCG00002563
AMCG00002579 mRNA upstream 425943 20269560 ~ 20274450 (-) True AMCG00002579
AMCG00002580 mRNA upstream 515940 20359557 ~ 20365199 (-) True AMCG00002580
AMCG00002578 mRNA upstream 661977 20505594 ~ 20512929 (-) True AMCG00002578
AMCG00002583 mRNA upstream 1283497 21127114 ~ 21128253 (-) True AMCG00002583
AMCG00002586 mRNA upstream 1512315 21355932 ~ 21360543 (-) True AMCG00002586
TU155250 other downstream 1848919 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 2998662 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 4892073 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 6184148 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 6808978 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 3242377 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 3338304 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 4417948 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 4448170 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 6460265 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000111_02207932_02211752.mRNA True 2433 mRNA 0.48 4 CI01000111 2207132 ~ 2212026 (+)