RNA id: TU155679


Basic Information

Item Value
RNA id TU155679
length 1513
RNA type TUCP
GC content 0.42
exon number 2
gene id AMCG00002573
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 20241848 ~ 20333030 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGATTTCGCAGAACATAGTTAAAACACATATACAGcgtatttgaaaacaaactttcGGATATTATATTCGTTATTTATACTAACGTTATCACAACAGAGAAGTCATccaatctgttttttttgtttttttttgtggtgttgCTGTTCGTTTGGCATTACCTGTCCCGTGTGAGTTATTTTCTCCCCGGTAGTGGATACATTAGCACTGTATCGACAGGCAGGGACGACCGAGACCCTAAGTGGAGCCAAACTATATCTGgcgtttttaatgtttatgaaGGACAAGAGCCTCTGCATGGAAGCCGCCATGTTTGCCCACTCTCCTCACCCAGAAGCCTTTGCGCACCTTGGCCCTTTTTTTAAGACAGCAGGGTTTCTGGGTCCTAGTGCTAGGAGATTACAACCTCGAAAATACataaactgtttgtttgttcaagTGAAGAActcacatcaataaataaatacattgataattgaaaaattaattagATAACATAAACTATGCCGTATAGTACAGCTTCAGTCAAGGCCAAACTGAACTGCAGTTGGAAACGGGCGGGTTCGAGGACCCGGCGGAAGTCTGCGTTGTGACTTTCCCCGGGCTCAAAGTCAGGCAGGTGACACGCTGCTCTCCAGGCCGAGTCTGCAAGGggacaatattattaatatcagcTGATCAGGATTGCTGCTTAAAgtCCTGATGCGATGGCACCCCTTTTGCTGCAGCACCTCGCCAGTTCGTTCACCAGGCAGATGGCACACCTGAGCAGATACAAGGCCAGCCCTTCCTCATTCTGTGCAAGGATGTATGGATGTCTTTCTAGGGTGGCCGTTCTGCCGCCAAAAATATCGCCATCTGCTTTCAGCATGTATAGGCTGCCCAGTATGCCTCTCCTTGGGCAGTGCCAGCTCCCGTGTTCGCAGCAGTTAGCGGGGATGAAGACAAAGACTGCATTAAAAAGACGCTGTCAGGACTGTTTCTTTGTGCGCAGAAGGGgaagattgtttgttttctgcaagaCGAATCCCCGACACAAGCAACGGCAAGCATGAAGGGAGAAACGAGGAGATTATGGATATGAAATGTTTGTAATCATGTATGCTTTGTTTGCAGTGAGATGCTTTGCAAATGTCactatttacaataattaaaaacaaatcaaacacttAATGTTTTGTTCCTATAAGCtgtatgtgttgtgttattGGTGTCCTTcctttttcagttaattaaatccTTTAAGGGTTCAGTCCATCCCACTCCAGTTTACTCTATAAGCTACATTTTGAATGATATACCATATTGAATGAATCATAATGCATTTGATTCATATCCCTTCCTTTTCATGTTGGCCACTATAACACTTGTACCTTATATTAATcagaaatgtttgtgtgtgtgtgtgctatatATTATTTCAGGGGTATAGGATGGTCGAACAGTATTTAAAGACCTTGTGCATTTTACAATTCCTcaccatttcaaaataaactaatcCAAAATCAATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155676 lncRNA upstream 33210 20240585 ~ 20240879 (+) True G124165
TU155657 lncRNA upstream 112336 20161547 ~ 20161753 (+) True G124150
TU155588 lncRNA upstream 879365 19391123 ~ 19394724 (+) True G124094
TU155559 lncRNA upstream 889855 19333799 ~ 19384234 (+) True G124070
TU155556 lncRNA upstream 989812 19283878 ~ 19284277 (+) True G124067
TU155690 lncRNA downstream 83068 20359323 ~ 20359695 (+) True G124178
TU155746 lncRNA downstream 285367 20561622 ~ 20562263 (+) True G124232
TU155851 lncRNA downstream 848760 21125015 ~ 21170354 (+) True G124331
TU155889 lncRNA downstream 1377527 21653782 ~ 21654725 (+) True G124364
TU155936 lncRNA downstream 1518739 21794994 ~ 21795202 (+) True G124403
AMCG00002572 mRNA upstream 35149 20229727 ~ 20238940 (+) True AMCG00002572
AMCG00002571 mRNA upstream 240229 20030158 ~ 20033860 (+) True AMCG00002571
AMCG00002564 mRNA upstream 863690 19407058 ~ 19410399 (+) True AMCG00002564
AMCG00002565 mRNA upstream 888788 19367316 ~ 19385301 (+) True AMCG00002565
AMCG00002561 mRNA upstream 1140522 19130067 ~ 19133567 (+) True AMCG00002561
AMCG00002574 mRNA downstream 94288 20370543 ~ 20396006 (+) True AMCG00002574
AMCG00002575 mRNA downstream 135581 20411836 ~ 20426798 (+) True AMCG00002575
AMCG00002576 mRNA downstream 181488 20457743 ~ 20463329 (+) True AMCG00002576
AMCG00002577 mRNA downstream 411095 20687350 ~ 20868956 (+) True AMCG00002577
AMCG00002581 mRNA downstream 745681 21021936 ~ 21054156 (+) True AMCG00002581
TU155541 other upstream 1141731 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 1435558 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 2289359 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 3314007 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 7144392 13125378 ~ 13129697 (+) True AMCG00002393
TU156269 other downstream 2791869 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 2876393 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 3401680 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 4145997 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 5999336 26275591 ~ 26278973 (+) False AMCG00002684

Expression Profile