RNA id: AMCG00002577



Basic Information


Item Value
RNA id AMCG00002577
length 705
RNA type mRNA
GC content 0.52
exon number 11
gene id AMCG00002577
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 20687350 ~ 20868956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTGCCCTGGCTTCAGCAGGACTGACACCATCTGTATGCTGAAATATGGCTTACGACAGAaaagggagggggtggggggggacaagGAGAGCGGCATCCAGCACCCAGAGCTACAGATCTCATCTCATCCTGGGCGTCGATGTAAAGCACATCATTCTTCTCCCTGTGGATCTCGCTCCTCCACCAGTAAAAGCCTATTGAAGTCTGGCGCTGTGTGTGGAACCTGCACTCCTCGCAGACTggcagagacacagggacagagcaGGGTCCGGCTGGGGCACGGACAAAGAGGCGGATTCGTATCGGAGTGCCAAGGGAACTTTAAAAGTACACAGAATAGACGATGTGCTGATTACCTTGCCCAGATCGTGCCACCTTCTGTGGAAGAATCAGACACCCATGCCTTGGCCTCTGACAGCGCTGGTGAGcatgaTGTGAACCAGATGGACTCTTCAGGGCTTAGCATCAAACAGAGCTGCCTATGGCTTAGTGAAGAGGCAGACTACCCAACAGAGAGCAGCACCAGCTGTGAGGTGAAGACAGTGGATGTTGAGGGACAAACTAAATTAGATGACAACAGGGATGCATCAGATATCCGAGAATACAACAACCCTGTCTCAGATATCTACACAAGTCTGTACAGCATCAGGATTTTTGTTACCATGCGAGACATATCCAACCAGCTTCAAGCTCCCGATGCCTaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU155746 lncRNA upstream 125087 20561622 ~ 20562263 (+) True G124232
TU155690 lncRNA upstream 327655 20359323 ~ 20359695 (+) True G124178
TU155676 lncRNA upstream 446471 20240585 ~ 20240879 (+) True G124165
TU155657 lncRNA upstream 525597 20161547 ~ 20161753 (+) True G124150
TU155588 lncRNA upstream 1292626 19391123 ~ 19394724 (+) True G124094
TU155851 lncRNA downstream 256059 21125015 ~ 21170354 (+) True G124331
TU155889 lncRNA downstream 784826 21653782 ~ 21654725 (+) True G124364
TU155936 lncRNA downstream 926038 21794994 ~ 21795202 (+) True G124403
TU155939 lncRNA downstream 926359 21795315 ~ 21795957 (+) True G124405
TU155942 lncRNA downstream 936664 21805620 ~ 21810821 (+) True G124408
AMCG00002576 mRNA upstream 224021 20457743 ~ 20463329 (+) True AMCG00002576
AMCG00002575 mRNA upstream 260552 20411836 ~ 20426798 (+) True AMCG00002575
AMCG00002574 mRNA upstream 291344 20370543 ~ 20396006 (+) True AMCG00002574
AMCG00002573 mRNA upstream 354320 20241848 ~ 20333030 (+) False AMCG00002573
AMCG00002572 mRNA upstream 448410 20229727 ~ 20238940 (+) True AMCG00002572
AMCG00002581 mRNA downstream 152980 21021936 ~ 21054156 (+) True AMCG00002581
AMCG00002582 mRNA downstream 185550 21054506 ~ 21070496 (+) True AMCG00002582
AMCG00002587 mRNA downstream 806115 21675071 ~ 21693525 (+) True AMCG00002587
AMCG00002588 mRNA downstream 830730 21699686 ~ 21742911 (+) True AMCG00002588
AMCG00002590 mRNA downstream 943622 21812578 ~ 21815488 (+) True AMCG00002590
TU155679 other upstream 411095 20274089 ~ 20276255 (+) True AMCG00002573
TU155541 other upstream 1554992 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 1848819 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 2702620 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 3727268 16958161 ~ 16960082 (+) True AMCG00002500
TU156269 other downstream 2199168 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 2283692 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 2808979 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 3553296 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 5406635 26275591 ~ 26278973 (+) False AMCG00002684

Expression Profile