RNA id: AMCG00002578


Basic Information

Item Value
RNA id AMCG00002578
length 5765
RNA type mRNA
GC content 0.40
exon number 2
gene id AMCG00002578
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 20505594 ~ 20512929 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGTATTGAAACACATCTATAATACGTATTGGATTCATAGGCTTGCGTTTGCAAGACATAGCAaagatttgtattcatttccTTTGATATAACTCCACATTTTTACAAGCTTCTGTCGAATTGCATGGTACTTCTTTTAGAAATGaccttttttttataatcagtAAGCAAAGGTTTGGCGTCACCGACTACCTTCCATAAGTAGTAAAGGGATTTCAGGACCCTGGAGAGCGTCCTATTTAGAAACCATACATCGCCCGCCTGTTTATGTACAAAAGTCTGGTTTTGAAAGCTGCAAATGCTACTGGAAGCTGGTTTCAACACTATACTGAAAATGACCTTGGGATATACATTTCCTTAACGGCACAGATATGTTGTGTAGCTGTCTCAACCTACAGTTTCCTCCGTAGCGTACAAGCTCCCGGTTTAGTTCATACAGGTGCCCGAGAACCGGTGCATTTCCGATGGCTTGTATTTTCTGGAAGACATTGAATAATGTGCATTACAAACAGCATTGCACGTGTTCCTGTgttgattggtttatttattcacGATTTATTTACTATATCCTCAAACATATGGTACGTGTTCCCATGTCTCCTCACTATATCTGATGTAGGCGCGTTGCATTTGTTATCATTGTAAATTAGAATGCGTAAGCTGCATAATAAGGCAttggattaaaaatatataaatatgtctcTTGAACACATGATCTTAGGGTGTCGATTCACTTGTGTTTACACTTGTCGGCTATTACACTGGTATCCGGCTTTAAACATgcgcatttgttttgtttctggtgAAACTGGGCTCTATCTGGAAGGAAAATCATTACAATCCTTGGGGTAAGCATACGTCACTTACTTGTTACATCTGTGCCTTTCCTTCTGTAGACATGATTTGATTACTAGTAGTGGTTTTGCAGACCTAGTGGAGCGTGTCATTGTATAATAGCTTTTCAAATATGTTGTACTCCATTTCAGGGTCATAGAGAAGGTAAGTtggaaattatgtatatacacatatacataagttggaaattatgtatatacacatataaaaacataactaaTTTGTGTGATTGTTTGTGAGACCTAACAAGGGCTGAGAAAGGAGAAGTAAACCACTACAAATGCTAAGTGCATTCAGGCTGATTCAATAGcagtcatttttacatttttaagtgttGTGGGTATACAGAATGACCTACCAAGCCATTTTGCAGAAATTGTTCACTTACATCCATCAAGAAATGTCTGGATGTGGTTCTTGAAACGGCTACCACTATACTACAAGAAACATAGGCCTTCCTCTTATTAGTCTCCCTTTTTCTTGCTTCTTTGTTGttcttcattttatatatatatgttataatcatcatcagtcTTTATCAATCCATtgctagatgaaggcctccccaagatatttccacttgtttctatgtacagtgtgtttttttctatttcacggcagcaaatcttatttcattcatattaacatttcaGGAGTAGACAACTCCAATTCAGCTCTCTCACTTTAACCCGATACAATTCTCCTTCCTAATCACACACCCCTAGCATTAGTCATTTTCCACAGTTCCACCGCTATGCCCCCTAACCTGCAAGTATCTCGCCAACCAGCTTACTTGAGCTAGACTTACACCCTCCTTCTCTCATTGACACATCCTTTGATTCCAGTGATGAACTGTTCCAGGAACTTAGTTCCTCATCTTTAAGCCGAGCTGCGTCTCCTTCACTCAAATCCATCATTGTCGCTCTTAGCCCTTTCACGAAGAGTCATCCTGGATCCTGTTCCTACTCCTCACAACACCTGCACCCTTGTCCAGCTCCTGACTCCCTCCCTTTACCCGCTGCTCAACCAGGGAGACCCCTCGTAGGACCTGCAAACCACACCATTTCAGCAGCAACAGTCAGACGCTGGCACAGGTTCTGCCCCAAATGCTCCTGCAAATACACTCCTCAGCGAAGGTCAAACCTCTGATTGCTCAATGGGCCACTACTTCTACCTTCCAGACCTTCTCCCTGTCCTCACATCCTCCACTCCGGGTCCACCTAATGACCAAACTCCTCCACCTGTAGTCCCTTTCTCCTGAACGAAAACCCGCAAAAGATAGTTGGCTTCTAACCAGTTGGATCCAACCATAATGGACTAGACCATTGCCCACCTGCATCAGGTTTCAAACGCCACTGCATTAAGTGAATACAGGTCACATCCCTTGCAACTCAATGAGGAATCCCAGATCACATGATCACATCACTTGACCGCCAGACCTCGGAAGCTTACTGAACATAAATTAGATCAGACATCAAACAAGACCATGCACATACATTCTGCATTGCCAGTATGGGAGTTTGCTTTACTCTTTTGGAACTTTAATTGTCTGGACTGAATTTAAACTAATGATAACATTTTGGGAGTGGAAAACTCTGATTCAGCTCTCTCACTTCTGccaaataaagtataaatacccCATCCTAATCTCACACCCCTAGCATTCTCCGTTTTGCATCCCACCACCTCTCCCGTCACTGCCTCTGCGGCAGCTCCTTGGCATATTCCCCCAGAAACaaagagtgggggggtgggggaagggtTGATGGTTTGGACCCAGCGCCAGACCATCATTCCCTCAGTCAGGTGAGTAAAGCCGTGTTGTAAACCACCTTggaaaaagaaaggagagaacTACACAAGGATAAATATTAACTTGTAAAGAGATTGATTCACATTGGTAAGACTTATCTAGAAAAGTCTGATCATTATATAGTCTAATAGTCTAGTTATTATATATAACTAACATAGTCCGTCTTAGTTAGCCAGGGTTGATTATTCAAGGATATGGATCAAATTATATTACTGGGCAGATGGCAAGGGGAGACTATTCCATTAacccctctatctctctctctatctctttctgtgtctctctctctggagaaCTGAGTTGTGTTTCATTCCATGTGTGTTCCAGATGTGAAGGATGAGTTCTTGCTCAGAGATCTGTGGGTCAGAGAATGCTGAGCAAGCCCAGAGTGCGGCAGAGAGCCAGTTCCAGCACTATGGAGTTCGCTCCTATTTGCACCAGTTCTACGAAGACTGCACAGCCTCTATCTGGGAGCGTGATGAAGATTTTCAGATTCAGAGATCCCCGAACAGGTGGAGCTCTGTTCTCTGGAAGgtcGGACTCATGTTTGGAACCCTATTTCTGGTCATTGGCCTGATAGTCATCACCGTTGGTTACACCGTTCCGCCGAGAATCGAAGCCTTTGGGGAAGATGAGTTGCTGTTTGTGGATAGCCACGCGGTACACTTTAACCGCGCTTTGGAGATCTGCAAGCTCGCCGGTGCCATCCTGTTTTGCATTGGGGGAACCATGATGGCAGTCTGCCTCCTAATGTCGGCATTTGCCAAGAGCTATTCCAAGGAAGAAAAGTACCTGCAACAGAAATTCAAGGAGAGAATAGCCAAATTGCAGGCTTCCGTGCACCCCATTACGAAAGCCCCTACTCCCGGAGAAAGTAAGATCCCTGTCACTCTGTCCAAGGTGCAAAATGTTCAGCCTACATCTGAAACCTGATGGTAAATGTTGGTGAAATTATATGTGAATCCATTTCCTTCAAGGTCAGCTCATATGATTAGtcagaaatggaaacaaaaaatacataaaaatggaaatacatgagaatataattaaaacccACTAAATAACTTTACACTAATGCCCTCCAGTGGatcattattcttttttttttttatccttctTTATGTTAAATTTCAATGGATCAGTTCCAGCATAATAAATGTGTTCTTGTTGTGGGATACAAGCAATTACTTGCAGTTCTGTGTTTAGGGCATTTTTTCACCTAACAGTTTGGAGGACAGGGAATTCACGCAGGGGGCTGTTTTTCTTCTATGAAATTCCTGCTTGAACACATGGCAGAGTAACCAGATTAACACTGATGAACAGACATCTATGTCTAAATTATGCCACAACACTGGATGGGAAAAGAATCTCACTGGTCTAATGGCTATAATAGCATATCTAAGCATcctataattaatttaaaaaaagcagaacagCTGAGAAGCGTATTGCCTGATAAAACTAGTTGACTcacataatacaatatattggtGACTGATGGCTTCCTTGgtatattgtttgtgtgtgtgtgctgggatgttaaaatattttataagcaagGGGCCCAAATAGAGGAAAAATTAGCAATATAATCCCCTAGCCCGATGGGGTAATGCTTGAGGTTTTAAACAGAAAGATTTACAGGAAGaatctgcatttcaaaatatcaactATTTTGTTAAGCAACATAATTACCATCATCCACTTTCCTTCACAATTTAACTATACCTTACTTGTCAATAGAATAGCATTTGTCCAGGGTAAATTCCTTCAGGTGAAGCAATTGTTTTTGTCACTGccttaattaatttggaaatcACATTCTGTAAACTAATACACTATGTACAATGGAGTTTAACAGTCAGAAAGGCAAATGTTTTTGCAGGAAGCCCAACTAAGATTATGATGACACCTATTTGGAAAAACACAGTAAGtgcatcaataaaataaaccagtgcTCACAAGACAGAATATCTCTGAAATGTCCTGCAATTGAATACAacagacatttaattttgaacTATTGTATTGTTTCTCCAAAACAAATTGCACTATTTGTTTAAACCAGATCACAGTCCAGATTTATTTGTGGTGTGTGTAATTGGGTCAGTCATTTTCTGTAGTAAACATTTGTTGGGGGGCCACAAATCATGACTAAAGTGAGCAGAAATTCAGCAGACGGAAGACTTGAGTCCAGCTAAGAACTTGAAACACAATAGGGGAAGACAAAAGAGGGGACACAGTATATTGAAAAAATCATGGAACTGCTACATTCagagtattttgtattaaatgtccTTGAATGTGATCGACTGTAATAGAAATTCCCTCACTTACCCTCACAGTGTATTCACAATCCCTGTCTTCAATAATCAGTAGTCCGAACACTCCTTGCCTTCCTGCAATAGTCTATGATTGATTGTGCAGTTTTCGGAGATGAAATGTTTGGAAACTTGCCAAAGTGGTTATTGTTAAACAGTACGCCTGGGCTGCAATTTCTGTTCATCTGGGgtcacattgaaaaataatttagcgctgttgtattttaaaataaataagtaagaacaacaacagcaaatcTGAGGgtataaatgtacatacatttagCGGTGGTAAAGAGATCAAATCTATAAATTATTGCTCATGTTTTAGGCCTTTACCTCATatgtaaagtgtatttttgAACCATGTTGTTGCATCAACATAACTCCTTTTGTATAATCATGTAAGCTGACCTTTGTAACTGAACAAAACCCCCCTCAGATCattattcttatatttttatagtaGTTAGCCACTTTCTTGTGTGTTGGAGGGGCTGTTTGAATATGCCTTTGTTTCAGAGGTATATGAGTTAAAATTTTCTCTAAACTTTGTCAACCCTGGGCCCTTGTACTGATCTCATCAAGTAATGTGGAAAACATTCAAGTACAAGTTATTCTATGACAACTACTGGAATTGAAATATATGGTattagagagaaagagagagagaaacggaaATTCTCAAGAAATAGGATTATTTTATGTCACACTTGTGACTAAAGATAgttttgtctatttttgaatggaTTTAATAAAGAAGATCTGGTCAGTC

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155687 lncRNA downstream 171140 20302072 ~ 20334454 (-) True G124175
TU155557 lncRNA downstream 1221301 19283878 ~ 19284293 (-) True G124068
TU155446 lncRNA downstream 1723228 18782145 ~ 18782366 (-) True G123981
TU155412 lncRNA downstream 1919664 18584709 ~ 18585930 (-) True G123961
TU155370 lncRNA downstream 2035987 18469234 ~ 18469607 (-) True G123926
TU155736 lncRNA upstream 27378 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 466168 20979097 ~ 21116735 (-) True G124327
TU155898 lncRNA upstream 1134126 21647055 ~ 21678545 (-) True AMCG00002584
TU155935 lncRNA upstream 1281844 21794773 ~ 21794988 (-) True G124402
TU155964 lncRNA upstream 1388736 21901665 ~ 21902223 (-) False AMCG00002596
AMCG00002580 mRNA downstream 140395 20359557 ~ 20365199 (-) True AMCG00002580
AMCG00002579 mRNA downstream 231144 20269560 ~ 20274450 (-) True AMCG00002579
AMCG00002570 mRNA downstream 661977 19838384 ~ 19843617 (-) True AMCG00002570
AMCG00002569 mRNA downstream 961789 19522852 ~ 19543805 (-) True AMCG00002569
AMCG00002568 mRNA downstream 1012323 19481866 ~ 19493271 (-) True AMCG00002568
AMCG00002583 mRNA upstream 614185 21127114 ~ 21128253 (-) True AMCG00002583
AMCG00002586 mRNA upstream 843003 21355932 ~ 21360543 (-) True AMCG00002586
AMCG00002585 mRNA upstream 1131431 21644360 ~ 21645046 (-) True AMCG00002585
AMCG00002584 mRNA upstream 1138964 21651893 ~ 21669222 (-) False AMCG00002584
AMCG00002589 mRNA upstream 1245904 21758833 ~ 21778461 (-) True AMCG00002589
TU155250 other downstream 2516129 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 3665872 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 5559283 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 6851358 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 7476188 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 2573065 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 2668992 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 3748636 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 3778858 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 5790953 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile