RNA id: AMCG00002579


Basic Information

Item Value
RNA id AMCG00002579
length 719
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00002579
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 20269560 ~ 20274450 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAAAAGGGCCAAGGTGCGCAAAGGCTTCTGGGTGAGGAGAGTGGGCAAACATGGCGGCTTCCATGCAGAGGCTCTTGTCCttcataaacattaaaaacgcCAGATATAGTTTGGCTCCACTTAGGGTCTCGGTCGTCCCTGCCTGTCGATACAGTGCTAATGTATCCACTACCGGGGAGAAAATAACTCACACGGGACAGGTGTATGATGACACGGACTTTAGACGAGCCAGATTCATCGGAAGGCAGAAAGAGGTCAATGAAAGCTTTGCCATAAACCTGGTGTCAGAGGAGCCAGTCAAAGAGGTGGAGAGCAGAGTGGTCTCCTGtgatgggggaggaggagctCTCGGACACCCCCGGGTCTTCATTAATCTGgATAAAGATACTAAAGTGGGGACGTGTGGCTATTGTGGGCTTCGATTTCAGCAGAAGCATCATCACTGAAGCGCTTGCAttgcctttttttgttgttagtAGTTACCAGATCTCTACGTGCATAATAAATTATTTCCTAAACTGaatcgttgttgttgttgttgtttaaataaaggttaaactttccaacaaaaacaacgtttattcatttttattttattttgaatttataatttgtgttgaTTATAGTATTTTCAATACgatttttcaattgtatttcatGCAGAAACCCATACCATGCTTTGTATATCATATTTTTGTAGTAATccaattattttga

Function

GO: NA

KEGG:

id description
K03939 NDUFS6; NADH dehydrogenase (ubiquinone) Fe-S protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155557 lncRNA downstream 985267 19283878 ~ 19284293 (-) True G124068
TU155446 lncRNA downstream 1487194 18782145 ~ 18782366 (-) True G123981
TU155412 lncRNA downstream 1683630 18584709 ~ 18585930 (-) True G123961
TU155370 lncRNA downstream 1799953 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 2063428 18205668 ~ 18206132 (-) True G123876
TU155687 lncRNA upstream 27622 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 265857 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 704647 20979097 ~ 21116735 (-) True G124327
TU155898 lncRNA upstream 1372605 21647055 ~ 21678545 (-) True AMCG00002584
TU155935 lncRNA upstream 1520323 21794773 ~ 21794988 (-) True G124402
AMCG00002570 mRNA downstream 425943 19838384 ~ 19843617 (-) True AMCG00002570
AMCG00002569 mRNA downstream 725755 19522852 ~ 19543805 (-) True AMCG00002569
AMCG00002568 mRNA downstream 776289 19481866 ~ 19493271 (-) True AMCG00002568
AMCG00002566 mRNA downstream 865937 19394342 ~ 19403623 (-) True AMCG00002566
AMCG00002567 mRNA downstream 903316 19362335 ~ 19366244 (-) True AMCG00002567
AMCG00002580 mRNA upstream 85107 20359557 ~ 20365199 (-) True AMCG00002580
AMCG00002578 mRNA upstream 231144 20505594 ~ 20512929 (-) True AMCG00002578
AMCG00002583 mRNA upstream 852664 21127114 ~ 21128253 (-) True AMCG00002583
AMCG00002586 mRNA upstream 1081482 21355932 ~ 21360543 (-) True AMCG00002586
AMCG00002585 mRNA upstream 1369910 21644360 ~ 21645046 (-) True AMCG00002585
TU155250 other downstream 2280095 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 3429838 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 5323249 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 6615324 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 7240154 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 2811544 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 2907471 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 3987115 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 4017337 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 6029432 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile