RNA id: AMCG00002586


Basic Information

Item Value
RNA id AMCG00002586
length 267
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00002586
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 21355932 ~ 21360543 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTATTTGACAGACACGGGGCCTCTAGCAGTGTTGGTTTCTGCTGTTGTTGGGTTCCAGGCATAACCATTGCTACTGATATCATCTGCGGCTTCCCAGGTGAGACAGCTGAAGATTTTCAGGAGACCATCCAACTTGTGAAGGAGTATAAATTCCCCAGCCTCTTCATCAATCAGTTTTACTCCAGACCCGGGACCCCTGCAGCCAAGATGGAGCAGGTCCCAGCACAAGAGTCCATGTTGTCTTTGATGGCAGCAGCATTGTAG

Function

GO:

id name namespace
GO:0009451 RNA modification biological_process
GO:0016740 transferase activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155844 lncRNA downstream 239197 20979097 ~ 21116735 (-) True G124327
TU155736 lncRNA downstream 815409 20540307 ~ 20540523 (-) True G124222
TU155687 lncRNA downstream 1021478 20302072 ~ 20334454 (-) True G124175
TU155557 lncRNA downstream 2071639 19283878 ~ 19284293 (-) True G124068
TU155446 lncRNA downstream 2573566 18782145 ~ 18782366 (-) True G123981
TU155898 lncRNA upstream 286512 21647055 ~ 21678545 (-) True AMCG00002584
TU155935 lncRNA upstream 434230 21794773 ~ 21794988 (-) True G124402
TU155964 lncRNA upstream 541122 21901665 ~ 21902223 (-) False AMCG00002596
TU155965 lncRNA upstream 558157 21918700 ~ 21918915 (-) True G124429
TU155967 lncRNA upstream 565064 21925607 ~ 21925856 (-) True G124431
AMCG00002583 mRNA downstream 227679 21127114 ~ 21128253 (-) True AMCG00002583
AMCG00002578 mRNA downstream 843003 20505594 ~ 20512929 (-) True AMCG00002578
AMCG00002580 mRNA downstream 990733 20359557 ~ 20365199 (-) True AMCG00002580
AMCG00002579 mRNA downstream 1081482 20269560 ~ 20274450 (-) True AMCG00002579
AMCG00002570 mRNA downstream 1512315 19838384 ~ 19843617 (-) True AMCG00002570
AMCG00002585 mRNA upstream 283817 21644360 ~ 21645046 (-) True AMCG00002585
AMCG00002584 mRNA upstream 291350 21651893 ~ 21669222 (-) False AMCG00002584
AMCG00002589 mRNA upstream 398290 21758833 ~ 21778461 (-) True AMCG00002589
AMCG00002591 mRNA upstream 434811 21795354 ~ 21802954 (-) True AMCG00002591
AMCG00002593 mRNA upstream 444801 21805344 ~ 21812132 (-) True AMCG00002593
TU155250 other downstream 3366467 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 4516210 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 6409621 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 7701696 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 8326526 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 1725451 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 1821378 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 2901022 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 2931244 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 4943339 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile