RNA id: AMCG00002589


Basic Information

Item Value
RNA id AMCG00002589
length 5736
RNA type mRNA
GC content 0.37
exon number 7
gene id AMCG00002589
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 21758833 ~ 21778461 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctAGCCTCTGAAAAATCACGTTACACCAAAAAGATGGTGCATCTAAGGAAGACACCTGGAGGAGAAGTGGCCTCTGAGAATTTAACACATGagaAACTGGAAATGGCACCACCAACAGCGGATCAGCTGAGATATGttcttCTACACAACGCAATCCCTTTCATTGGCTTTGGCTTCTTGGACAACGCCATCATGATAGCTGCTggaaCACAAATAGAACTGTCTTTAGGTGTCATCTTTGGAATTTCAACCATGGCAGCTGCAGCCCTAGGAAACCTGGTTTCAGACCTGGCGGGACTCGGCCTTGCAGGGTATGTTGAAGCACTAGCTTGCAGACTAGGCCTGCAGATCCCTGACCTCACTCCCAAGCAAGCGGACATGTGGCAGACCAGACTGAGTGCCCACACTGGCAAAGCCATAGGAGTTTTCATCGGCTGTGTGCTGGGAATGTTCCCCCTACTCTTCCTCTCTGGAGATGACGAAGAAGCGAAACTGGAAAAGTAACCCGAGAACCCAGAGACTTGAATGGCAATAAGCTGACTTACCTCAAGTATTGGAAAATGATTGACTTTCCATTGAATCGAAGAACCAATGGACTACAAGCAGTAACCATGGGAACAAACTGTTCTACTATACatacttttttcctcttcttaaGCAGGCCTGAGCAAACTAGAATACTAACACTATGAGCATGACTTTATTTGACCATGCCAtcttcataaatataaatatcttaaTGTTCTCATTACTaaatatctgtgtgtatgtggagCAGTTTTAAACAAGTGTAACTTTGAGGGTGAATGCTAATTGCCGGACACTGTAACTgcttatttttgtcttcatttttcttttccttttgtggCTGTAGCTCGACTCTTCGACTAGTTTAGTTAGCGCACTAACTCTCTGAGGATCCGAAAGACGTAATGCTAAAGATTTTAGGAGTGAGTTCTGCATGTCCACTTACACAAAGCAAGGAACTCTTTGGTGACATCTGCTTTACACGGCCTGAGCACATTGGGGCGTTCTTGGGGAAGGTACAAATTAGATTAGTTGAATTAACACGCATTCAAtttaatgattacattttccttCCTGTAGATTTGGTTTAACACTACTGTTTTGGGGAAGCACTGGgtacatttgtcattttctttgagTTCAAACCACAGTTTCAACTGTTTAGTGTAGTTCCAGTACAGTAGCTGCTGTGCTATCCAGAACTCCTCTGATCAAAGATTTGAAAGCTGCAATGCAACTAAATTAGTTTGCTAGGAATAGATTTGAACCAAGACAGGTTGTGAAGGATTTAGGTGGAAGCTGATAATGAATACAGAACTTCAGGGCCTGTGCAATACAAGTATTTTCTCTACAACAAATAATATACTTAAACATGACCCTGACAAGAATCTACAATGTTCTGTTTTGACACGTTTAATTTTATGGTAATTGTAACAacctaaaaaaagaaactgcaaaataaattccAATCTTTTTaatctcattaaaatattagAGGAAtagtaaaaacaattatatattttttttcccatgtcTAACTTTTTCTTGATGGCATCCAAATGACCTACTCTTACCTCCAGTAAAGAAATATGTTactttcatattatatattatgaatCAATATCCAATATGAACATAAAGCTAGAATGCAAGTATAGAAATTTTGAGGAAAAGCATTGCATTTgttacaaactatttaaaaatgcttaaatgttATCTAAAAAcgcaatggaaaaaaatgaattccatttttagtttttaaaatgtttaggttTAGCTTTTTTCTCAATACTAATTTCAGGCTAACTTTATAGGGGAGGAAGATATGATGGAAGATGATGGAGGTTTGGGGCTTTTTGTGTAGGTGTACATCTTTAATAGATGTGGTGTGTCCTCACTTTATTGATGGACACTGAATGGAAAACTAGTAGGAGTTGGGAAGAATAATACAAGATTATATCTGCACAGGTTTAATACTGCTGtaatagaaaaggaaattaaccTTTTAATCATGACCTTTGATTAACTTAAGGTGCTTTGAACAGgaaatctgattaaaaaaaaaaatacagtatttaaccAAATAGGGGAACAAGGACATTTATTAAAAGATACTTTCTCTGTAAATCCCTTTTAGTTTTGTGatgaaagcaaaaatacaacgtgtttgcatttttaatcagtttagAATGAAGCACTGACAGCGACCAGGCActatataatgttaaaatgaagcacaacaaaataaaaccagtgaattttaaatgaagaaattatataaaaggagatttataaatacattaagtaaACCTAAATGATTTGAGTTAGAAAGCTGGACAGGATAATTTCCCCAAAACCTAATCCATGTGCTTATAAACATCCGAGGTGAACTAATGGAAACGGCAGCAGCATGTTTCAGTGGGATGCATTTTCCTGTGCAGAACGATAATGCATCAAAGCAAGTACTATTTATACTGTTAGCTTGGTAAGTGTATCGTTGGAGATGGtttcacacacactttttttttttttttttattatagctGGCTGGTGTCacccttgtttttgtttacttgtgGAGTTAAATGACCTATTTGGGATCCTTAACTTCTATAATGATGTGCTTCCCCAACTCAAAAAGCAGTATAAGGTGGTTTGCTGAAGGAATCTGCTGTGTACATTCATTAATTGAGAACAGCTGGAATCAAAACCAGACACGGCTAGTTTAGATTAACGAATAGGAATTTTTCATTAATAGGTGTCCGTTCCAGATAACCAACATGTCCTAGGAAGATTAGGAGAGCTGTGTGCAAGGAATTTATAGCCCTCTTGATTTTAATGTGGTGATTTTAAAGTTGTACATTCAAACTAgatgtgattttcttttatttttatgagaaaATGTGACTTTAGACAGTTTTCACAAGTATACCAGAAAGGACAGAAGTGGAACATAGCATGCTttggtttaatacattttttttttttgtatctgcagTGCTGTTGCAGTATGtagaacaatatatttattattcaccTGTTCTGTTTACATTGTAGTGACGgtctgtcctgttgtgtttCGCTCTTAAGCATGATGAGGGTTTGTCAAAAATGAATTTCTGTACATGTTGCACTGAGTTAAGACTTTGAACGGAGGttgaattgtttttcaatattttagtttgattttcTTCATACTAATACAACTAACCAGTTTGGTTAATCTGAATTCAAGGGCTGAATACAAGCCTTATTTAGTCTTGCCAGTAGTTGAAAATGCATGGCACTGCTTGTTATGACAGTAAATGTGTCTGGATTATAAGGCTGAGCAAAATGTTTATTCCTTTAGTCTCTTTATTAGTAGAATCCACTTATTATGCAGCCCGTAGTGttaatttatgaaaatcaatgaaagtaattttgaaaaattatGAAATGCTCTTTGTAATGTAGACCTCTTCACTATTAACAATTTTGGAATTAAAATCCAATTGAAACATTGTCACTGTATAggaattaatttctttattaatattaagaaaagGCCAAACCTTTTGTTCAGCtgttttttgggtttttttttttttttttggcatccTACAAATGTAATCCGATAGCACTGTTTCCCAGAGCCTGATGTGTCTTTGCTTTGGTAATCATTTCCTTCagtttgatttgcttttcattgtcATTTCAAAGCAATTTCCCCAGGAGATATTTCCCTTGCAAGCAGGAGTGTCAGTCTAATACCCTCCATTTCCAAATATTCATTTGTATCCACTCCGTTCAAAACTATTCAATACACGAGAGAGACCCGTGTTGTGATGGGGGAACAGGGCAGCTGCAAAAGAGTTTgccaacattaaaataaaggtaaattAATATTCAGTCCAGGTGAAAAGCATAACTCTTCCTTTTCCCATTTGATGAAGAAGTGCATTTCAGTCAACCAGGTTATTatggaggggagaaaaaaaaatcaccccaAAAACAAACGAGTGTAATTAATTACCTCACGCGTCATTCTGTGGATTGATGCAGCATTTATACCGACATTTACACGGACCTCGGTAAATCATTCATATAAATCAGCCGACACTAGAACACCGAATTGCATCAGAAGAGCTATATATAGGGACAATGTCATTTATCACCCTCTAGAAAAGGCCTATTTTTAGGTACTTTTTTTTGCACATTCACAGTATGCTGTCAGCCAAAAGAGGCTTCCTGTCTTTACCTATAGTTGATATATAGTACACTTGTATCTTGCCTGAAAGTGTGTTAGTGAAGTAGAGGGTGATTTTGACATTTTGGACAAGccagctgaaatgaaagatttgAGTATGCAAAGTGCGTTTGTATGACACAGGTCTGCGTAGACCGAGATACTCAAACTCCCATGCAAGTAATGGTAATGAGAGAATTACCCCTGATCCCTGATCTCTTTAACTCAGCTGGGGTTTCTTGTGTGATCTAGTTTGGATGTTGGTtggggggtgtttttttttttttttttgctcactTAGTTGCcttaattgttattattgaagTACTTCTTGAACAATTCTCCCTGAATAAATGTTTAGCAGTAGAAAAGCCATGTTTTGCACAACAGGCTTCATGAAGATGCAGACCTATAGAGGCAAAAGAGAGCCCAAATTAAACCAGACAGCCTTGAAGCTGAATTCAGTTTAAACCTGCAGAAATAGTGATTACAGCTTCAACATACAGGGGGtgattttttctctttccattgaaccatttcaattgcttttatatatatttttttaacccctGCAGTCTCCAaaccaacattttcaaatacttcATGTAAATATTAGAAGAAAGCATTCAATACTAATCCACAATAATTAATCATATGAAAGGCGCAAGAGGTACATTCAGTCCCCATGGGAACCTTGCCAAGCTATACTGTGGAATGTCATTATTCGACTTCGTCGCGGCGTTTCACACAGAAGAGGACACGTCGAACATATTTGGCATTGAGGACTGTATTTCCCCACCTATACTGGTCTGtctagtaaataaataatgaggtgTATACAGTTTTCGTTTCATCAGTGACTGAAATGGTttgatcaataaaaaaaacacaatatactaGACCATGAAGGAGCTGGAAATGGTAGATCAGAAGCAGTTTCCTGTACGGAGGCTCCACATGGGGCCGGGCTCCTCTTTATTTGTGGAAGGATTTCCTCAGCATGTCTTGTGCTGTAATGCTGTTCTCATCATTCAGCGAGTGACATTCAAGGTCCTCTGAGAAGCAATTTGCAGCATGAGGGTATATGCgatgatttattgttattaataatttcctctaatttgtaatacatttaaaattggaaGTGGACGTGTCTGCTACAGCTAAAATGCAAATTTCAGAGTCGCAGTACTGCATAGTTTGTTCACCCGCTATGCCAGGATGTCCCACACCAGTGCATTTAAGCCAATGAAAGTCAACTCAAACCTGGCATGTTCTTGGTATTATTTTGTTCagttgggtgttttttttttagcttttagaAGTATTTTTACATAACATTGAAGTCTTGGTAATATGAGTCtgggtctgtgtctgtctgcagatCTCTGTCTGGGATTTTGTGTCATAAACCTCCAACAGACTtgttaatgtgttgttttgcaaaagaaaaataaatagctggTTAGTGTGAAGTGGTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155898 lncRNA downstream 80288 21647055 ~ 21678545 (-) True AMCG00002584
TU155844 lncRNA downstream 642098 20979097 ~ 21116735 (-) True G124327
TU155736 lncRNA downstream 1218310 20540307 ~ 20540523 (-) True G124222
TU155687 lncRNA downstream 1424379 20302072 ~ 20334454 (-) True G124175
TU155557 lncRNA downstream 2474540 19283878 ~ 19284293 (-) True G124068
TU155935 lncRNA upstream 16312 21794773 ~ 21794988 (-) True G124402
TU155964 lncRNA upstream 123204 21901665 ~ 21902223 (-) False AMCG00002596
TU155965 lncRNA upstream 140239 21918700 ~ 21918915 (-) True G124429
TU155967 lncRNA upstream 147146 21925607 ~ 21925856 (-) True G124431
TU155970 lncRNA upstream 162716 21941177 ~ 21953671 (-) True G124434
AMCG00002584 mRNA downstream 89611 21651893 ~ 21669222 (-) False AMCG00002584
AMCG00002585 mRNA downstream 113787 21644360 ~ 21645046 (-) True AMCG00002585
AMCG00002586 mRNA downstream 398290 21355932 ~ 21360543 (-) True AMCG00002586
AMCG00002583 mRNA downstream 630580 21127114 ~ 21128253 (-) True AMCG00002583
AMCG00002578 mRNA downstream 1245904 20505594 ~ 20512929 (-) True AMCG00002578
AMCG00002591 mRNA upstream 16893 21795354 ~ 21802954 (-) True AMCG00002591
AMCG00002593 mRNA upstream 26883 21805344 ~ 21812132 (-) True AMCG00002593
AMCG00002592 mRNA upstream 37004 21815465 ~ 21837472 (-) True AMCG00002592
AMCG00002596 mRNA upstream 122831 21901292 ~ 21902597 (-) True AMCG00002596
AMCG00002595 mRNA upstream 242115 22020576 ~ 22039356 (-) True AMCG00002595
TU155250 other downstream 3769368 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 4919111 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 6812522 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 8104597 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 8729427 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 1307533 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 1403460 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 2483104 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 2513326 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 4525421 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile