RNA id: AMCG00002592


Basic Information

Item Value
RNA id AMCG00002592
length 5605
RNA type mRNA
GC content 0.45
exon number 12
gene id AMCG00002592
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 21815465 ~ 21837472 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttggaatattttaatttgtaaactgACCAGTCTCTCCATCTTTTTCAGGAGGTACAAGAGACATTGGATCTGCACTGACGAGGATGTGTATGAGACACAGAAGTATAGAATCGAAACTTCGACAGTTTTCTGCGGCTTTCATCGACTGCCTGATTAACCCACTTCAGGACCAGATGGAggaatggaagaaggtggctaACACACTGGATAAAGACCACGCAAAAGAATACAAGAAAGCCCGACAGGAGATCAAAAAGAAATCTTCAGACACACTGAAGCTGCAGAAGAAAGCAAAGAAagGGAGAGGGGACATCCAACCCCAGCTGGATAGTGCCCTGCAGGATGTCAACGACAAGTATCTGCTGCTGGAGGAGACTGAGAAGCAGGCCGTCCGCAAGGCCCTCATCGAGGAGAGAGGGCGCTTCTGTGCGTTTGTTTCCATGCTGCGTCCCGTTGTGGAGGAAGAGATCTCCATGCTTGGAGAGATCACTCACCTGCAGACCATTGCCGATGACCTGAAGTCCCTGACTATGGACCCTCACAAGCTGCCACCCGCCAGCGAACAGGTCATTCTCGATCTCAAAGGCTCCGACTATAACTGGTCGTATCAGACTCCTCCGTCCTCTCCCAGCACTACGATGTCACGGAAATCCAGTGTGTGCAGCAGTCTGAACAGCGTTAACAGTAGCGACTCCAGGTCGAGCGGGTCGCACTCTCACTCACCCACTTCACACTATCGCTACCGCAGCTCCACCCTGCCCCAGCAGGCCCCCGTCAGGCTGTCCAGCGTGTCGTCCCACGACTCGGGCTTCATCTCTCAGGACGCCTTCCAGTCCAAGTCCCCCTCCCCCATGCCCCCAGAGACCATCCCTCAGACCTCCTCCAGCTCCGCCTCCTCTGACGCCTCTGAGACCTGCCAGTCCATGAGCGAGTGCAGCTCCCCCACCTCCGTCAGCTCCGGCTCCACAATGGGGGGGGCCTGGGCCTCTGCTGAAAAGTTGTCAAATGGTTACGATCACTACAGCCCATCCACCGATCCACCCATCTTGACTCCGAATGGCTCAGCTGGCCAGTtccctgtcccccccccccactcctcctcccGGGCTTGGTCACGGCCTGGCTCTTCCTTGCTCCCCGATTACCCCCTCTATTGCACCCTGGGGCCCGGCATGCTCCCCTCGTCCAAGATCCCCAGCTGgaagGACTGGGCCAAACCAGGCCCCTATGACCAGCCCATGGTGAACACCCTACAGAGACGCAAGGACAAGCGTGAGCCAGTGGAGCCCAGTCCTCAGGCCACACAGCCAGCTCCAGGGGACGACGCTCAGAGACACCGCAGCATGACCGTGTCCACGACACCCAGGGGGGAGGAGATGGAGCCCCATGAAGAGCTGGCCCTCGCTCTGACCCGCGGGCTGCAGCTGGACACGCAGCGCTCCAGCCGGGACTCCCTGCAGTGCTCCAGCGGCTACAGCACCCAGACCACCACGCCCTGCTGCTCCGAGGACACCATCCCTTCACAAGTGTCGGATTATGACTATTTCTCGGTCAGTGGGGACCAGGAGGTGGACCAGCAGGATTTCGACAAGTCCTCCACCATCCCTCGCAACAGTGACATCAGCCAGTCCTACCGTAAAATGTTCCAAGCCAAACGACCTGCCTCCACCGCTGGCATCCCCTCCACCGCGGGGCCGGTCATCATCACCCCTGGCGTGGCCACCATCCGCCGCACGCCCTCCACCAAGCCCTCCGTACGGCGTGCCGCGGTAGGGGGTGGCCCCATCCCCATCAAGACACCCATGATCCCAGTGAAGACGCCCACTGTACCGGACCTCCCGGGGGGCTTCCCCTGCAGCTTAGCGGCCGAAGAGTCCGTGGAGCAGGGCAGCCCGGAATCGCCCATGGCAGCGGCGGTGGAGAGCGAGGCCTGGAGCGGCCAGGCTACCACCAACCCTCCCATCCCTCCCCCGCAGCCCAGCGATGCAGAGATTGAGAGCGGGGTCCCACAGGCCTCCGGGAGCGAGGACACCCTAGCTGAAGAGGCCTCTCAGGAGGCGGACCCTCAGGGCGATAACATGCTCCTCGCCATCCGCAGGGGAGTTAAACTGAAGAAGACGATGACCAATGACAGATCCGCACCCCGCATTGCATAGAAGCAGAGTCTCCAGGGGCCCCATATGAGTTTTATACTGCTTTCAAACATGTGACAATACTCAGTACGGGCCAAACAGGCTGCGTCCATTCCAGAAAACATCGGGGAGAATTATTCTTTTATCTgtcttgtctttgtttttgaaggtgCCGTGTGGTGGACCTGGCtaggggagagggggaagcgAGGTTCCCTTTGAATATTTTTCTAAAcgattggaaaaataaatgcaacaatcATTTCTTCTCATTCATTTTGGTTTAATCTTGTACATACTTTTAACCCCCGGATGTTTTGCAAATTGCTCCTCCTCCTTGCTTCGCCCACCTCCTGATGTACCCGAAGGTGCCAAATTTTGTCTTGGAAACTGTTGAAATGACCGGGATTGTGTTACACAAACAGATGGAACATTCATGAACTTTTGATTTTACTGCAGATACGTGACAGAGGTGTTCAGAGACTGAagcccacacacacagtggggAGTGAactctgctttttctttttcgaGATGATTGTACTTGCTTGGTTAGCAATCAGTTGTCTGAAGTATTGGAAGGGTAAATCTTTTTTGAGAGGTGATGCAGCAAATAACCAGCTAACAGTAAGCAATACTTTGCAGGTGAAGCCTGGCTTtgatactgtatattttaaattataaatgtgccATGACAAAAACAGgacactgttaaaaataaaacaaaaaacattaaaaacaaaaacaaacacctgtAAAGAAAGACATCTGCTAATGGCTTATCAGTACACATATTATCAAATTGCCATATCTGattattacatttatgatttgtCTAGGCTATAGTGAGTCTtgtgttctgtttctttttattcttcacTGTACACTAAATTATGGATCATACTGCATGCAACCTTAACTCTACACTTAAGGTTAACCTACACCCTGCAGGCTCAATACAGTATCGCATTGCTTCATACGTCTAGGGAAATCGTATACTTTAAGgctaaagcaatttaaaatttatatacaaatatatatatactttattaagTATTATTGAAAGGATTctctttttttaactgtattttttaagacCCAAGTTTGGTATAATTTCAGTTTAAGCACTGATATTGCATTCTGAAGGGGCAGTAGCCGAGATAATCAATAATTGCtagtaaattgtaaatatttcattcaaatgGCAATCCAGGGGCTTAATTTATTGTTTATCTTTAGATTCCCCCCCAATATTTTGGCTCaggtatgcatttgttttcagctatgtctgtttatattttaaaatgttgctgtgttttacagaaatgcatacacacaattctgttcaaaatgtcatggcttcatgtatttatacctgtaagaaaaaaacaaacttcattGTAATTGAACAAGTGGTGAGGCTTGAATCATTTTCAGTGACTTAATTGACCTCAGAATAAGGGCATGCCTAATGACTGGGATAGAGTATTGCTTGTGCTGAAGGTTTCACATCCTTTGTACCCATTCTGAGCCTATTTCAGCTGAACTGTAAAATGAATTCAATAATCCAGCTTCTCTGCTATATATTCATCATTTTTGTTCAAAAGCTTTACACTGTTTTCCCCACGGAAGCATACAAATGCAGTCAGAGCCAAAACAGAGCCCATTCACCCAGCTACACCCAAGGACTGTAGTTCCCAAAGGATAATAGAGTACACTGTTCATTGTGTATCGTCTAGGACTGTaaactgtattactgtattaactgtattattgctcTTTTGGCACAAATCAAAGTATACCCTTAGAATTGTACAGTCTTGTGTACAAAGATCATCCAgtgtattgtaaatattgtcAGATGCAAGCTTCAGTTGACATCCTCTCCAAAAAACCAATCACACACAACAAGCACTAAGTGTCTGGGCATCTTCCTGTCGTCTCTGTAGTGTTGTAGGGCCAACGTGCTGCGCGACAGTAGTGCCCGACCAAGAAGATGCATGGGTGTTGAAATGCAACAATTCAGAAGAACCAGGTTAGTTGCAAAACTcaaggaaaaaagtgaaaataaaaggatGTGTTGGGTAGAACTGTTGTGGGTCTCTTAAGGAAACTCATTTGCAGCTCACTCATTGTGTATGCAAACGGGGAAAAGGTGCACAGGAGCCAAGGAATGTCTTGAAGCATTTAAAACACGATTACCACTAATGTTTTACGGCATCGAAATGAGGTTTTGGAGATGTTTGAATCTTCAGAGAGATTGTAACTGATTAAAAGCctttttattaacaattaactTTATAAGCTTTGATGTTTGGCACTGAAAGTCTGGGGTTGAGTATACTGTGAATCAGTTGTACCAGCTGTTCAAAGCCAGTATGTGCGAGTACACTCactgtgtgttgcattttatGCACTATCatcctattttatttaaatatataagtacTTAGTTTATCCAATTTAATTTCCAGCCAGCCCCTGGTTTGAGGTGTAATTTAAACGAACTGAAGCTTGTTGTAATCTTTTAAAGACTTGCTTCTAAAAACCGTGAATTCTAAAATAGTTTCATGTAGCTGATGCATTGTGCATATGATGCTAAAACTATTACGTGGTTACCATCTCatattacagaaatgttttgatATCGTCAGTGTAGAAACCTTTAGTTGtataatgctgtattttttttttaaattacagccGTTAATGTTTAGGTATTTAACTTCAAGCATACCAcaaatataaaagttaaaaaaagaataaaaaataaagttgccAAATTATATGTAACAATGTGTAAGCTGGTTAAAATATCAGACCTAGTTTAAgaagttcctgtgtttttgcatATTGTAAAAGCAGACTGTCACCTTTTAAGAATAATAGATTTTGTTTCTATAATGGTTTAGTTGCTAGTTTGTACTGAGAGTTGATCTCTCCCGTGCCATTCTCAACAGGCTGTAAATTGGTCGGTTCCTGTATCGTCTCCCTTTTTTTGTGTAATGATTGCTTCAGCCTATATTAAAGAGAAATGTCAGAATTGTCTGTGTCCTAACCTGCTatttgagggggaaaaaacattgtacCTGTTGATTTGAATTAGAATGTGTTAAGAATAAATGTTAggttcatttttctttccatattCTTGGTTTTAGAAACTTTTTGCAGATTGTTTTTACTATCATGTAATCTcacatttaccttttctttgCGTAACACACTCAATGTATCTAAATTGCACCATTTTATTGGAAGTGGATACTGCCCGCCACATGTGAGACTGTTTAACTGAGCAGATTTATAACCTCTGGATTAAACTCCAATCGGAACATTGCACCAAACTGTAGAGGTCGTGAAAATATAGCGAATAGTATGTGATGATTAGAAAAGAGATTTAGAACAGATgctgtaatttatatattttatcaagGTTGTCATATGTTGTTCTTAGTTCTTAATAAATGATC

Function

GO: NA

KEGG:

id description
K20128 MTSS1; metastasis suppressor protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155935 lncRNA downstream 20477 21794773 ~ 21794988 (-) True G124402
TU155898 lncRNA downstream 136920 21647055 ~ 21678545 (-) True AMCG00002584
TU155844 lncRNA downstream 698730 20979097 ~ 21116735 (-) True G124327
TU155736 lncRNA downstream 1274942 20540307 ~ 20540523 (-) True G124222
TU155687 lncRNA downstream 1481011 20302072 ~ 20334454 (-) True G124175
TU155964 lncRNA upstream 64193 21901665 ~ 21902223 (-) False AMCG00002596
TU155965 lncRNA upstream 81228 21918700 ~ 21918915 (-) True G124429
TU155967 lncRNA upstream 88135 21925607 ~ 21925856 (-) True G124431
TU155970 lncRNA upstream 103705 21941177 ~ 21953671 (-) True G124434
TU156091 lncRNA upstream 599414 22436886 ~ 22438729 (-) True G124535
AMCG00002593 mRNA downstream 3333 21805344 ~ 21812132 (-) True AMCG00002593
AMCG00002591 mRNA downstream 12511 21795354 ~ 21802954 (-) True AMCG00002591
AMCG00002589 mRNA downstream 37004 21758833 ~ 21778461 (-) True AMCG00002589
AMCG00002584 mRNA downstream 146243 21651893 ~ 21669222 (-) False AMCG00002584
AMCG00002585 mRNA downstream 170419 21644360 ~ 21645046 (-) True AMCG00002585
AMCG00002596 mRNA upstream 63820 21901292 ~ 21902597 (-) True AMCG00002596
AMCG00002595 mRNA upstream 183104 22020576 ~ 22039356 (-) True AMCG00002595
AMCG00002594 mRNA upstream 203908 22041380 ~ 22109859 (-) True AMCG00002594
AMCG00002597 mRNA upstream 341460 22178932 ~ 22218008 (-) True AMCG00002597
AMCG00002602 mRNA upstream 464849 22302321 ~ 22323050 (-) True AMCG00002602
TU155250 other downstream 3826000 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 4975743 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 6869154 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 8161229 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 8786059 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 1248522 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 1344449 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 2424093 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 2454315 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 4466410 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile