RNA id: AMCG00002593


Basic Information

Item Value
RNA id AMCG00002593
length 850
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00002593
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 21805344 ~ 21812132 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAATTATGGGAATTGTGCAGCCTGCGTGTGGATTCTGTATCAACACTGGTACCAGAGCAATCATGGCACACTTTACACTTATTGatatTGGTGTGAACTTGACAGATCCAATGTTTCGAGGAATATACAGAGGCAATCAAAAACACCAAGATGACTTTGAACAGATCATAGAAAGAGCCACGAAAATTGGGGTCCAGAAGTTAATGATCACAGGAGGAAGCTTGCAGGACAGTAAGGCAGCCTTGACGATGGCACAGTCTCGGGATGAATTCTACTGCACTGTGGGATGCCACCCAACTCGCTGTAGTGAGTTTGAGCAGAGCGGCGCTGATCAGTACCTCACAGACCTGAAGGACCTGGCCAAGTCAAACAGGGACAAGGTTGTGGCCATTGGGGAGTGCGGCCTTGATTTTGACAGATTGGAGTTTTGTCCTAAAGAGACCCAGCTTCGGTACTTTGAAAAGCAATTTGATTTGGCTGAAGAAACTAAGCTGCCAATGTTCCTCCATTGTAGGAACTCACACAAGGAATTTATAGATGCCCCCTGGTGTGGAGTGAAGAACACTCATGCTGGGTCAAAGTTCATCAAAACTACCTTTCCCACTAAGAAGAAGTGGGAGGCTGGCCACTGCCTTAAGGACAGGAATGAACCCTGCCATATCATTCAAGTGCTCGAGGTTATGGCTGCCACAAGAGAGGAGGATCCTATTGAGATGGCAAAcaccattttcaaaaacacaatgaaggTCTTCTTCTAGAGATGTTGATCCAGGATATTATGCCAGCCTAGACTGTTTCTGGTTCAGTGGGACATTTTAAGTATGTAATAAAAAGGACATTAAAACAGA

Function

GO:

id name namespace
GO:0000737 DNA catabolic process, endonucleolytic biological_process
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters molecular_function

KEGG:

id description
K03424 tatD; TatD DNase family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155935 lncRNA downstream 10356 21794773 ~ 21794988 (-) True G124402
TU155898 lncRNA downstream 126799 21647055 ~ 21678545 (-) True AMCG00002584
TU155844 lncRNA downstream 688609 20979097 ~ 21116735 (-) True G124327
TU155736 lncRNA downstream 1264821 20540307 ~ 20540523 (-) True G124222
TU155687 lncRNA downstream 1470890 20302072 ~ 20334454 (-) True G124175
TU155964 lncRNA upstream 89533 21901665 ~ 21902223 (-) False AMCG00002596
TU155965 lncRNA upstream 106568 21918700 ~ 21918915 (-) True G124429
TU155967 lncRNA upstream 113475 21925607 ~ 21925856 (-) True G124431
TU155970 lncRNA upstream 129045 21941177 ~ 21953671 (-) True G124434
TU156091 lncRNA upstream 624754 22436886 ~ 22438729 (-) True G124535
AMCG00002591 mRNA downstream 2390 21795354 ~ 21802954 (-) True AMCG00002591
AMCG00002589 mRNA downstream 26883 21758833 ~ 21778461 (-) True AMCG00002589
AMCG00002584 mRNA downstream 136122 21651893 ~ 21669222 (-) False AMCG00002584
AMCG00002585 mRNA downstream 160298 21644360 ~ 21645046 (-) True AMCG00002585
AMCG00002586 mRNA downstream 444801 21355932 ~ 21360543 (-) True AMCG00002586
AMCG00002592 mRNA upstream 3333 21815465 ~ 21837472 (-) True AMCG00002592
AMCG00002596 mRNA upstream 89160 21901292 ~ 21902597 (-) True AMCG00002596
AMCG00002595 mRNA upstream 208444 22020576 ~ 22039356 (-) True AMCG00002595
AMCG00002594 mRNA upstream 229248 22041380 ~ 22109859 (-) True AMCG00002594
AMCG00002597 mRNA upstream 366800 22178932 ~ 22218008 (-) True AMCG00002597
TU155250 other downstream 3815879 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 4965622 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 6859033 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 8151108 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 8775938 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 1273862 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 1369789 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 2449433 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 2479655 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 4491750 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile