RNA id: AMCG00002597


Basic Information

Item Value
RNA id AMCG00002597
length 2986
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00002597
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22178932 ~ 22218008 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTTTCAAGAAAGGAGGCGAAGGAGATGATGATCTTGGCATCAACAGCAGCACAGTCGTGCAGAAGAAGAGGTTGAATGAATTGGATGAAAAGTATGAAGAGTGGTTGGGGGACATGAGAGGAGGAGTTAATGATGGAATGGATAGTATAAGTATGGAAACTTGTCCAAACCTCCTCTACTCCGAAGAAGAGATGGGTGTTAGCAAGCTGAGGTCGCAGACAACTATGAAGCTGCATGTGTTATTTGCTGTCTCATTTTCCTGGGCTCTTCACGAGGTACCTGTACCGCAGTATCAGCACTGGGACCCTGTAACCGCTCAGCTTTATGCCTGTGACCAGTGTCCGCCAGGTACAGCACTGCAGCAACACTGCACTGCCAACAGTCCGACCGTGTGCTCGCCCTGCCCTGAGCACCATTTCTCCGAGTACTGGCACTGGGATGACAAATGTCAGTACTGCACCACCATCTGCAAAGAAAAGCAGTTTGTCCAGCAAGAATGTAACCGCACGCATAACCGGGTCTGCGAATGTATTGAGGGCTACCATCTTGAGGTTGAATTCTGCGTTAAACACACGGCTTGCTCACCAGGATTTGGCGTGAAGGTGCTGGGCACAACAGAAAGTGATACAGTTTGCGAGAAATGTCCAAAGGGATACTATTCAGACAGAGATTCAGAGATGGAACCCTGCATGAAACATCAAAACTGCACACAACTTGGGCTTGCGACCGCCACTCCTGGCACGCCAAAACACGACGCAGTGTGCGAGAGTCACGGCAGAAAAACCCCCTCGGACTGCTTCCGTCGCCACCATCGCTGTCACACAGaTATCACACTGTGTGAAGAGGCCATATTCCAGTTCATCCCCTCTCAAGAGCTGTCCTCCCTCCAGCTGGATGTTTTAATTCAGAGCTTGCCTGGGAGGAAAGTGGATATCCGCAACATGGAGCGCATCCGAAAGACATGCAGCCCTAAGCAACAGATTCTGCACTTGCTCAAACTGTGGATGCAGAAGAACAGGGATCAGGATGGGATGCTCAGCATTATACGAGATGTCAATCATTGCGAGAGAGTGGTGTCCAGGTGTATGAGTTTTAAGAATCTAACGTTGAGCCAATTGACAGCAGTCATGGAAAGCCTGCCAGGAAACAAAGTGAAAGAGGAGGACATTAGGCAAACCATGATGGCTTGTGACTCGGAGCACCGGGTTCTGCAGCTCCTGCATTTATGGAAGATGCAAAATGGAGACCAAGACATTGCCAAAGGACTTTCTCAAAGCGTTCGAAAACTCAGAACCAAGAAAGTCCCCAAAAGGTTACTGAAGAGCATTAAACGCATCATAAACATTTTCAGTACCTCGTCTATACACAAAATGCGTCACAGCACACGCCTCCTCCCCAAACAAAGATATAAACCGAGCAGCATGAAGAACTGCGCGGAAGAAGAGAAAATGTTCATCAAAACGTTGCTCCTAGCTGTGTGTACTGTGGCCTTGTGTATTGACTGCAACACTGACGTTGTGGTGCATGGGAAAGCGCCTACATACCAGCATCAAGATCCAGTCACTGGTAAGATGCTCTCCTGTGACCACTGTCCCCCGGGGACACACCTGCACAGTCACTGCACCGCGACCAGGCAGACTGTCTGCGCACCCTGTCCAGCTTCTCACTACACCCAGTACTGGAATTACCTATACAGCTGCCAGTACTGCAACAATTTCTGCAACGAGAACCAGTTCGTCAAGAAGGAGTGTTCTGCTCTTCACAACCGCATCTGCGAGTGCAGGGAAGGCTACTTCTGGGATTCGGAGTTCTGCCTCAAGCATACGGAGTGCCCTTCAGGATATGGGATCAAAGTGAAAGGAACTGCATACAAAGATACCCTGTGTGAGAAATGCCCTTCTGGGTACTTCTCTTCAAAAACCTTGGGACACCTCTCGTGTGTGAAGCACACCAACTGCACCACTCTTGGCTTGAAACAGGTTCTCCAAGGCACTGCCTGGCACAACAGCTTGTGTGTCCCTTGCAACGATCTTGAAGCTCaagGTAATCTGCCTTTATACAGAGAATTCCTTCCAGATTTCTTTGCACGTCAAAAGATGAAACGTAAGAAGGTGATCCGGTTCGGAATCAGCCTTTTTCGCGAGGAAGGGATGAAGCTCTTGGAAGACCATACACACCTTTCTGCTCAGAAACTCATCCAGGTTTATGTGATGGAGTGGATGTCTCTTCGGAAAACAGGCACAGATCCTGTTAAGACAATAATGGATCTGCTTAAGAAATCGAGTCTCCACAAAGTAGCAAGGAAGTTAGGGAGAAAACTGAAACCCATTTTCGAAAGTAATCCCTGTCATGTTGAAAAGAATTCTAAGCACAAGACTCATTAAGAGCTTGTGCAAGGTTATCTGAGAAACAAATGTCAAACACAccaactaataaataaataaataaataaatagtcgtTTTGTAATCCCTGTCACAGGACATTAGGCAAATAATGGTTTTCTCAAATTGAGAATCAAAGTTTGTGTAGGATATGTCTCCAACATATCCACTGGAGTACACCACAAATGGCTTGCATTTAAGATTCAGTGCTTTTTTGTGCAACTGGATTGTGCCTAGTGGTCAGGTGAACTTTATTTAAAGACCTTAAACTGTTAtcaaacattatattcagatttattttttatttttgtacccCTCTTTGCAGGGAATTACTTGTataacatgatatatatatatatttgaaatgcctTCGCTggtttctgaatatatttttataggcAAATGCTTACAGTATAACAACTTTTCTGGAGCTATGCAATTCCAATCCGATTGGTGTTCATATTGTACTTGATTGCTTACCCACCACCATAATGAGAGGTTTCCTGTCAGGAGAGCAGTTTCTGTATGTTCTTTGTTCTCTGTAGTTGGTTAtgcaattttcttttcatattcttTTTTTGTAGTATGTTTTGCATGCAC

Function

GO: NA

KEGG:

id description
K05148 TNFRSF11B, OPG; tumor necrosis factor receptor superfamily member 11B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155970 lncRNA downstream 225261 21941177 ~ 21953671 (-) True G124434
TU155967 lncRNA downstream 253076 21925607 ~ 21925856 (-) True G124431
TU155965 lncRNA downstream 260017 21918700 ~ 21918915 (-) True G124429
TU155964 lncRNA downstream 276709 21901665 ~ 21902223 (-) False AMCG00002596
TU155935 lncRNA downstream 383944 21794773 ~ 21794988 (-) True G124402
TU156091 lncRNA upstream 218878 22436886 ~ 22438729 (-) True G124535
TU156148 lncRNA upstream 379991 22597999 ~ 22598555 (-) True G124582
TU156157 lncRNA upstream 435474 22653482 ~ 22653719 (-) True G124591
TU156251 lncRNA upstream 778811 22996819 ~ 22999108 (-) True G124669
TU156319 lncRNA upstream 920610 23138618 ~ 23296115 (-) False G124719
AMCG00002594 mRNA downstream 69073 22041380 ~ 22109859 (-) True AMCG00002594
AMCG00002595 mRNA downstream 139576 22020576 ~ 22039356 (-) True AMCG00002595
AMCG00002596 mRNA downstream 276335 21901292 ~ 21902597 (-) True AMCG00002596
AMCG00002592 mRNA downstream 341460 21815465 ~ 21837472 (-) True AMCG00002592
AMCG00002593 mRNA downstream 366800 21805344 ~ 21812132 (-) True AMCG00002593
AMCG00002602 mRNA upstream 84313 22302321 ~ 22323050 (-) True AMCG00002602
AMCG00002603 mRNA upstream 105178 22323186 ~ 22348504 (-) True AMCG00002603
AMCG00002605 mRNA upstream 136110 22354118 ~ 22380792 (-) True AMCG00002605
AMCG00002606 mRNA upstream 163536 22381544 ~ 22389385 (-) True AMCG00002606
AMCG00002608 mRNA upstream 343109 22561117 ~ 22568988 (-) True AMCG00002608
TU155250 other downstream 4189467 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 5339210 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 7232621 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 8524696 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9149526 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 867986 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 963913 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 2043557 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 2073779 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 4085874 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile