RNA id: AMCG00002602


Basic Information

Item Value
RNA id AMCG00002602
length 5710
RNA type mRNA
GC content 0.43
exon number 26
gene id AMCG00002602
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22302321 ~ 22323050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACTTTCAGAGATTCAAAGGTCACCGCCATCTACGTTTTGTAGACTCAGCTTCTAAGAGAAGAGAAGTGACTGAAAATCATGGGGATTGTACAGGGTTTAAGTAAGAGGAAAATTATTGTTATCAGTGTTTTGGCAGTGTCCATTGTGACGATCATAATTGGACTCGGGCTTGGTCTAGGACTCCAACTACAAGAATGCCGAAATAAAGTTGAAGTCCCCACTTCTTGCAAGAACCGCTGCTATGTGCCCTATGAGGAAGGATCCACGGCCTGCCGCTGTGATAACACCTGTGCTACCAGCAACAACTGCTGCCCTGACTTCGAGGACATCTGCCTGCAGCCTACTCAACAATGGGAATGCAATAAAGCCCGCTGTGGTGAGACGAGGCACCAGAAGAGTAATTGTCACTGTTCAGATGACTGCCTGAATTTGGGGGATTGCTGCACAAATTTTAAACATGTCTGTCAAGGTCCTATCACACGCCTCATGTTTTTCACTGGTAGTATCATCTGTGcttggtttctttctttctcttatcGGCAATTCAGCTTCAAAAGGCAACCCGTGCTCCTGGTTTCGCTGGATGGACTTCGAGCAGAATATCTGCAGACTTGGAGTAAACTCATTCCAGTTATAGAGAAGCTAAgaAACTGTGGGACTCACGCTCCTTACATGCAGGCAGTATTTCCGAGCAAGACATTCCCCAATCATTACAGCATCGTCACTGGCATGTATTCAGAGTCTCATGGTCTTGTGGACAACAACATGTATGACCCTGTCTTTAAAGCATCATTTGCCCTTGGTAATGAAGAGTCATTCAAACCCAGATGGTTCCTTGGCCAGCCTATATGGCATACTGCAATGTACCACGGCCTGAAATCAGGGACATATTTCTGGCCTGGGTCTGATGTCAAAATCAATGGAAGTTTCCCAAATTTGTATGAAAAATTCAATGGCTCAGTGCCGTTTGAGAAAAGAGTCTTCACAGTTCTGAAGTGGCTCAGCTTACCTGAAAAAGACAGGCCAGATTTCTATACCTTATACCTGGAAGAGCCAGACAGCTCAGGACACAGCTTCGGCCCTGTCAGTGGTGGGGTAATTGAAGCTCTCCAAGGAGTTGACAAGATCATGGGCCAATTAATGAATGGTCTTAAACAGCTCAATCTTCACCAATGTGTCAATATTATAATAGCTGCTGATCATGGAATGGATGAGACCAGCTGTCAGAGAATGGAGTTCCTCCAAAattttgttgaaaatgaaaaccatctCTATATATATCAGGGAGCATTTGGAAGAATTCGAGCAAAAGATGACCAGCAAAGCCTTGACTCGGCTGGACTTGTGGCGAACTTGACATGCAAAAAAGAAGGACAAAATATTAAGCCATTCCTCAAGGCTCACCTTCCCAAGAGGATGCACTATGCGAACAGCATACGCATCGAAGATGTGACTGTGCTGGTGGATGCACAATGGCTGTTTGCAAGGAACAAAGACAGTTATACTCGCTGTAATGGTGGGACCCATGGCTATGACAATGACTACTATAGTATGCAAGCTATGTTTCTAGGATATGGACCCAAGTTTCTGTATAAATCTCAGGTGGAACCATTTTCCAACATAGAACTTTATAATCTCATGTGTGatttgctgGAAATCCCTCCTGCTCCTAATAATGGTACCCATGGGAGCATGAATCACCTTCTGAGAAAGCCAGCATATAACCCTGCTTACCCCCAAGAGGTGACCAAAAGTGGAGTGTGCCCTGTGGAGACTTTAACACCTGAAGACACGCTGAACTGCACTTGCCTTGCCATGGGCACAGCTAATTATAATGACAGACTGAATCTGACAGCGGCTGAAGTGGCCGCCTGTGAGGCCACACACATGCCCTTCGGGAGGCCCAGAATGATGCGATCTGAAGAGGACTACTGCCTGCTACATCAGCATGGCTACGTCAATGCCTACAGCAAGAAATCCCTGATGCCTGTCTGGACTTCCTACACCCTGGATAAACCTGGTAATTTGGCATCCTTGCCCAATATCATTCCAGACTGTAAAAGGGCTGATGTCCGGATCCCAGGTGCCCAGAGCCCGAGATGTAACTTCTACAGTCCTGATGCTAATGTTTCATCTGCGTTTCTTTACCCTCCCAatctCAACATCTCAACGGTCGACGGACAGTATGATGGTCTGCTGATGAGCAATGTGGTTCCTATGTATCCACAGTTTAAGAGAATCTGGGATTATTTCCACAATGTTCTGTTGAAGAAATACGCCTTCCAGTACAATGGGATAAACGTGGTGTCTGGGCCTGTTTTCGATTACAACTATGATGGACGATTTGATACCCCTGCTGAGATTAAACAAGCGGACAACAGTGAGGTTTGCAATAGTCAGGAGGATGCGTCCAAATGGGTGGAAGATCTCCTGTGGTTTCATCAATGTAAGGTGACCGATGTGGAGTGGATCGCTGGACTAGACTTCTATCAGGACAGTGGGAAGCCAATTCCAGAGATCCTGCGAATCAAATCACGGCCAACCGCCTCCATCCACAGGGTGAATTAAATGTCCTTCATTGGCAAAGAAGATGTTGACCttcaaagtaaaaaacaacaacaaaaaactttggtaacattttttaattcctcTGGCCCCCATTTGCAATTTaggattttatgtttttctccaGATGAAACCCATTTTGAAACATTGAACAATGGGGTGTAAAATTAGAATGAAAGAAACTCCATCAAGTATGAAACCGTTTAAGATCAAAAGGCTGGAAATATTGTTAGACATCAAAGGAAGAATGTCCTTGTTTTGTATCTGTTCTGAAATCCAGCCTGGGCCACATTATTGAAACTATATTTATGGTGTAAAGGTATCTTCACAAGACTGGCATTGACTGAATAAGCATACTTAATTATgatcattttcttaattttcaaataaatatggatttaatATGGAGTGCACAGCACTTGAAAAAGACCTTGGTGAGCAGTACATTTTGATACACCTGGAAGAGAAATTACACTCAGAACAGAATAATATTAATCTACCTGGTTCTTTGTTCACACCCAGCACACATTCCTACATGGTTATTCTGCTCTAAGAAGAAACAGGTCCAGAAGCTTTCAACTTATTTTTCCAGGAAAAAAGACTGTATAATGGACTGTATGAGTCTGCCAAGTTGACTcagtttcaattaaatgtattttttttctctctgcagtGGATGCAAACTAAATCTAAGATACTCTCAATTTTAAGAAATTAGAAGCCTTTTAATAAATGATCgttcatttaaatatgatttttttttttttattaagtgaCTTTTTTGTAACCGAAAATACCCCATCCTCAACTTGACCCAGTCAGGTTTGCCCCTTACTTAACTATCTTAGAATTTGTATGGTGTAGAAACCATGGAGACTGATATTTGGTATGTTTAAGGAGGCACTGCAACAGAAATGGTTGCTTCTAGTGTCAACAAGCTGCTTTCAATAGCGGTGTAAAAAGGCTGAATGAAAATATGCTGTCATCCATATTTCGGAGGGGgaagcattgtttttttaagaaggcAGGAGGGAGATGGACAGAAACAAAGCTTCAATGGCTTTGGTAATGATATGGAGAACTACTAAATGGACttggttttgaaatgcatacCTTATTTAGGATATATTTGTcaggaatgtttttttctttgtatttgcaGGCCTCTGAATTTCAGATTATTTATCTACGCAAAGGTTTTGCCATGATTTTACACAATAAATCTATCCAAGACATAAAGTATGCCCTATATGTAGTTCTAAAAATAGTACACTTTTTGTGGTGATCtgtcttttttgctttttttacttttcaaaaatGATGTACACAGATTCCTCATCTGCAATGCACCTTCTCTCACAAGTGTATTTCCCATGtcttaatgttttcttttttttttgggggggggggaactaaAATGCTACAGGAACAAATGTGTAATGAATTgctgatcataataataaagtcatcaatagttttttctaaataaaaaaatacacatttaatgcaATAACTTGTAACAGCACAAGAAAACTCACCTTGCAGTAAAGGTTGAGTGTCcctttgaaaacaacaacaaaaatgcatatatatacacacacacacacacacacactctctattTACATTCACCTTCCACACAAAGAAAATCCAAAACAAAGACTGGACACAAATTTCACACCATGACAAAATATACAGCAAGTATTTACAGTCATTCAGTCTGAGATATTTGCAGGTTTGGCAACGCAGTCAATAATATCCAGTAAAGCCAGGCCAATTTATCTCTTTAACATAGAAACAATCATCGGCATACATTGTCCTGTTATATAGAGAGACATGTCTGGTTGCTATATTGCAGTGGTGTACAATTCTGGCCCTTGCAGTTCCTGTATattgcaatgcaatgcagtCGATGTATATATTGGAGTGCTTTTCGCTTACTTCCGAGCCCTGGCTATTTAATCTGCACAATGGTCTGGGGAGCTGGCTGTCTCTTTACCTACGCATTGCCTGTACAATAAAGTTAAGGATTGTGTTATAACATACCAGCTTTCAGTTGTAATGTCGTATACTGTGTCTCATTATATGACCATCAGAATTAAAAACGTCTCTGTTAGGTCAAACTTTGGCAAAGGTGTGCAGAAATGCAACCGAAATAGGCGCTTAGATGTTGAAAGCTGGGCTCCCTCTGTGTTTAAAGACCAATTTAGAGAGATTGTCACCTTCACTGAACAGTGATAGAATAATAAATCTAGACTCCTTTACATAAATGCCCATGACATCCCTCCCCACACACAGGTAACAGCACTTGCACTATTTTAAGGAAACTGTAAACCACAGTTACATCCAGCTGAAGGTTTGCTGAATGtctctttatattttcagtCCGCTGAACATAGGGTCTGACGTGTGGTAGACTGCATTGTCTCGGGGGCAGTGGCTGTGGCAGGCACAGGTGTTGATGAACATCATGGGCTTCTTAATGACTTTGCCCTGTGGACACCGAAACTCCACCTGCACGGTCTTGGTGCTGTGTGGCGTGCAGCACCGTCCGTCCCGGCACACGCCACAGAATCTGGGTCTGTAGGCCTGGATGCTGGTGCAGTTTTTGAATGTGAAGTGAGTTGGAATCACAGTCTTGGTGGTTCTCATGCACTTCTTTCCTTTCTAGCTCGGGTTCCTGTGCTGCTGACCGCAGGGCCTGACAATACACAGGCGGTTCTGCTTCACCATCTCGCAGTGTCGGTTGCAATTGGTCACGCGGGTTGACACCCCCAGCCCACAGGACCGCGAGCAGGCCCCCCACTCTGTGGTCTGCTCAATGCAGTTGACACTGGGATCCAAGAGGTTGGCTCCAACTCCAACTGTCTCCTCTTCCCTGTAAGCGGCCATCGCGAAGCCTCCAAGGGGGGTTTCTGCCCTGGGGTTGCACACCCACTTCTCGCAGCACTCGCCCGGGACCTGCACTTTCCTGGGGAAGGGGCAGTCGGGGCCGGGGAGCAAGACGTCCAGGTTACAGCGGGGCACGCAGCCTATTTGCCCGTCTCTGCAGGCACACTGGTATTTACAGCTGGGGAAGAATATTTCACCGTTCTGATAGACAGAGCCATCAAACACACAGATATCCCCTTCCCGGGCTGccaa

Function

GO: NA

KEGG:

id description
K01513 ENPP1_3, CD203; ectonucleotide pyrophosphatase/phosphodiesterase family member 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155970 lncRNA downstream 348650 21941177 ~ 21953671 (-) True G124434
TU155967 lncRNA downstream 376465 21925607 ~ 21925856 (-) True G124431
TU155965 lncRNA downstream 383406 21918700 ~ 21918915 (-) True G124429
TU155964 lncRNA downstream 400098 21901665 ~ 21902223 (-) False AMCG00002596
TU155935 lncRNA downstream 507333 21794773 ~ 21794988 (-) True G124402
TU156091 lncRNA upstream 113836 22436886 ~ 22438729 (-) True G124535
TU156148 lncRNA upstream 274949 22597999 ~ 22598555 (-) True G124582
TU156157 lncRNA upstream 330432 22653482 ~ 22653719 (-) True G124591
TU156251 lncRNA upstream 673769 22996819 ~ 22999108 (-) True G124669
TU156319 lncRNA upstream 815568 23138618 ~ 23296115 (-) False G124719
AMCG00002597 mRNA downstream 84313 22178932 ~ 22218008 (-) True AMCG00002597
AMCG00002594 mRNA downstream 192462 22041380 ~ 22109859 (-) True AMCG00002594
AMCG00002595 mRNA downstream 262965 22020576 ~ 22039356 (-) True AMCG00002595
AMCG00002596 mRNA downstream 399724 21901292 ~ 21902597 (-) True AMCG00002596
AMCG00002592 mRNA downstream 464849 21815465 ~ 21837472 (-) True AMCG00002592
AMCG00002603 mRNA upstream 136 22323186 ~ 22348504 (-) True AMCG00002603
AMCG00002605 mRNA upstream 31068 22354118 ~ 22380792 (-) True AMCG00002605
AMCG00002606 mRNA upstream 58494 22381544 ~ 22389385 (-) True AMCG00002606
AMCG00002608 mRNA upstream 238067 22561117 ~ 22568988 (-) True AMCG00002608
AMCG00002610 mRNA upstream 275574 22598624 ~ 22620244 (-) True AMCG00002610
TU155250 other downstream 4312856 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 5462599 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 7356010 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 8648085 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9272915 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 762944 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 858871 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1938515 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1968737 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3980832 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile