RNA id: AMCG00002603


Basic Information

Item Value
RNA id AMCG00002603
length 4150
RNA type mRNA
GC content 0.45
exon number 26
gene id AMCG00002603
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22323186 ~ 22348504 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttttcttccaccACATCGACTAGGACTTGCAAGGCCAGGTCATGTGCGTTGGAGTAAAAGCCGGAGCTGTAGGCTGATTCTGTTTAAAGGACATCTGCCAATGGAGCCATTGTCCCCAAGGACAGCTGTCACCATTACTTCATCTGCATTGGTTCAGGCTAAAAAAGCAAACGGAATAATGCAAACAAGCTGGGAAGCCCCCACACTTAACACAGGGCACTGGCACAGAGAGCCCTTACTGCGGGGTCAGAGCCGGAGCGCACAGCACCTTCCCACCATGGTCCTGCTGGGAAAACTGcgcagcgcagcgcagctcAGCGCACTTCATTccccgcagcagcagcagcagcagcagcagcggcgcGCCGGGCGGGCTGTCAGCATGGGCGAGCACAGGGCGCTTTCCGTTAGACAGgtaTTCTGCGCTTTCTTCATTTTCGGTGCAAATGTTACTTTGGGATACATTTACAATCGCCACAGACGCTCCGGAGAATGGGACGAAGCCCCATCAGATCCCGAACATGTTCTTGCAGATTACCCATGGGTAAGCACTTCAGGATCATGCAAAGGCAGATGCTTTGAACTACATGAAGCCGAACCTCCTGGCTGCCGCTGTGACAACTTATGCAAAACTTACAACAGCTGCTGCTCAGATTTTGATGAGCATTGCTTAAAAACAGcTCTAGGCTTTGAATGCTCTAAGGACCGTTGTGGAGAGGCCCGAAATGAGGATCACGCCTGTCATTGTTCTGAGGACTGCATGAGCAAAGGAGACTGTTGTACCAACTACAGGGCGCTATGTAAAGGGGACTCTTCCTGGTTGGAGGAGGAATGTGAGGAGATTAAAAGTGCCGAATGCCCGGCTGGGTTTGTTCTTCCTCCTCTGATAATGGTCTCAATTGATGGCTTCCGTGCCTCTTACATGAAGAAAGGCAATACTGTCATCCCCAACATTGACAAACTGAGAACATGTGGTACTCACTCGCCTTATATGAGACCAGTCTACCCCACAAAAACCTTTCCCAACTTATACACACTGGCCACTGGCCTCTATCCAGAGTCACATGGGATTGTTGGTAATTCCATGCACGATCCTGTGTTTGATGCCAACTTTAACCTTCGAGGTCGAGAGAAACTGAATCATCGTTGGTGGGGAGGTCAACCAATATGGATCACATCGGTAAAACAAGGAGTGAAGGCTGGCACTTTTTTCTGGCCGGTgGTTATTCCTCTTGAACGGAGAGTGATGACAATACTTCAGTGGCTTAATCTGCCAGACAGTGAAAGGCCGTACGTCTATGCCTTCCACTCAGAGCAGCCAGATAGTTTTGGCCACAGACTGGGACCTTTAAGCAATGAGTTAAACAACCCACTGAAAGATATTGACAAAATCATCGGGCAGCTGATGGACGGCCTGAAACAGATGAAGCTGCATCGCTGTGTGAATGTCATCCTAGTGGGAGACCACGATGACCCCAAAGCAGTTGTAGCAAATCTAACCtgcaaAAAGACTGAACAGCACTTTAAGCCTTACTTGAAACAGAACCTCCCTAAGCGTTTGCACTACGCCAACAACAGGAGAATTGAAGACGTACATTTACTTGTGGAAAGGAAGTGGCATGTTGCAAGGAAATCTACAGATGGCAAAAAGCACCCTGGGAAATGCTCTTTCTATGGAGACCATGGCTACGACAATAAAATCAACAGCATGCAGACCATCTTTTTGGGGTATGGTCCTTCCTTTAAATACAAGACAAAGGTCCCAGCATTTGAAAACATCGAGCTCTATAATGTCATGTGTGACCTTTTGGGTCTGAAGCCTGCTCCTAACAACGGGACCCACGGAAGTCTGAACCACCTATTGAAAAACCCCTCGTTCAAGCCAACCATGCCTGATGAAGTGGCTAAGCCACACCCTGTATCTGCCTCTACTGTAACTGATGACCTGGGGTGCTCATGTGAGGAGAAGAAGGGGGATGAATCGAGCTCACGCCTGACAAGCAAAGGATCGGatgTGCTCTATGCTGTCAATGGTTTAAACCTGGCGCACAGCCTTAGTGCAGAAAGCAAGCATCTACCATATGGCCGACCTGCTGTACTTTACCGTACAAAACACAGCCTTCTATACCACAACGACTATGTCAGTGGTTACAGTGAGATCTTGTCAATGCCTTTGTGGACATCATACACTGTCCCCAAACAGGCAGACACTTCGCCTCTGCCGGACTCGCTGAGTAACTGTGTGAGGCCTGACCTCCGCATCGCCCCCGCCCACAGCCAGTCCTGCACTGCGTACAAGGGGGACAAACAGATATCCTACGGGTTCCTCTATCCACCACAACTGGCATCAGCTGAGGCAAGATATGATGCCCTACTCATCACAAACACTGTTCCGATGTACCCAGCCTTTAAAAGGGTGTGGCACTACTTCCAGAGGACCCTGGTGAAGCGTTACGCAAGCGAGAGGAACGGGGTTAATGTGGTGAGCGGCCCCATCTTCGACTTTGACTACGATGGACTACGCGACTCGGCAGAAAAAATGAAGCAGTTTGTGAGTGGATCGGTGCCGATTCCTACTCACTACTACAGTATCATCACCAGCTGTCTGGACTACACACAGACCGCGGACAAGTGCGACGGCCCACTCAGCGTTTTCTCCTTCATCTTCCCTCACAGATCTGAGAATGACGAGAGCTGTAATagcTCTGAGGAGGAATCCAAGTGGGTGGAAGACCTCATGAAAATGCATACAGCTCGGGTCAGGGATATCGAAGCTCTGACAGGCCTGGACTTCTATCGCAAGACCAGCAGAAGTTACACTGAAATCCTTTCGTTAAAGACTTACTTGCATACATATGAGAGCGAGATCTAGAGAGCTAACGCAGTGTGGTACATCTTAGATGCACAggtgtatatttttatactgtttCGTATTTATTAttcctgaaatgttttaatggcCATTAGTATTCTAATCATATCTAACAAATGggccttttttaaaataacaagcaTGGAGGGACCTTTTGATTTTGTgtaattcttttattttttttaatttgtttaatgtcgTTTTAAATAAGTTTTTAGTGTGTCTGAAAAACGTCTGAATTCGGGGGATTTGTTTTAGGTGGAAAGCTTTGAGGGGGTGCTACAAGAGTGCGAGTTTATggtgctgtactgtacactaCAGTGAATATTGcgtgtatacatgtattattaaactGTGTGATTGACTTATTTATGCCTTATAGACCAATGAAATCACAACATAATAAACAAAGTTTTTTTCCAAATTGAGTGCCGATGTCTTTGGCTTGTATGTTATCATTATTGGTGTCATGGTAATGACGAAATGATCTGTAATAAAtcgaaatgtattattttatgacattttttcGTTAGTATGTGCATATTAGTATGTGCTAAGTTTTGCATTTGCATCACATAGTAATTTGCAGTGCTAATAATTTGCAATTATTAGTAGCTAATTTGAGCAATTGTGTACGTTTTATATGCTGTGTGGCAATGattaatgttattgtaatcTGGAGTGTAGTTCCACTGCAATCACATTAGATCAGATGTTCAAGGCACTGGATTTAGAGCTCATGTTGAATCAGCTGTAGGCTATAACTTTATGCAATCACATATTGATTGCCTTGGTTAGTTTGGTTAGTTTGACCTGGTTTTATGAGAATATAAGTATTTGTTCTTGATTTGTAACCTATATAATACAGAAAGACTtgaagtttgttgtttttctaatatCTCAACACATACTTCCAATGTTATATTGTTAATGTGGCATATCTACAGACACTGATCCATCCTACTGTAACTACATGCAAAGTTATGGTTATGAAGTTCCACTGTTTTCAATCACTTGTGTTCCTATAAAGAAAGGTTGCTCTTATTATACCTAAGAAGCAAAACTGCAGTTTGGAGGATTCTAAGAAGACTTGGAAAAGCAATCTATCTTTTGACCCCTTTGCTTAGAATACAAAATCcctatgtttttcttattaataaACTGTTCTGCTTGCTTACCAGCGTTCCACCTCAAAATATGATTGCAAAGCATGTTTGCCATATTTGCATCCATATCCTAAGTAATAAATGAGTCTGTTGATCATTAACCTCCAGGA

Function

GO: NA

KEGG:

id description
K01122 ENPP2; ectonucleotide pyrophosphatase/phosphodiesterase family member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155970 lncRNA downstream 369515 21941177 ~ 21953671 (-) True G124434
TU155967 lncRNA downstream 397330 21925607 ~ 21925856 (-) True G124431
TU155965 lncRNA downstream 404271 21918700 ~ 21918915 (-) True G124429
TU155964 lncRNA downstream 420963 21901665 ~ 21902223 (-) False AMCG00002596
TU155935 lncRNA downstream 528198 21794773 ~ 21794988 (-) True G124402
TU156091 lncRNA upstream 88382 22436886 ~ 22438729 (-) True G124535
TU156148 lncRNA upstream 249495 22597999 ~ 22598555 (-) True G124582
TU156157 lncRNA upstream 304978 22653482 ~ 22653719 (-) True G124591
TU156251 lncRNA upstream 648315 22996819 ~ 22999108 (-) True G124669
TU156319 lncRNA upstream 790114 23138618 ~ 23296115 (-) False G124719
AMCG00002602 mRNA downstream 136 22302321 ~ 22323050 (-) True AMCG00002602
AMCG00002597 mRNA downstream 105178 22178932 ~ 22218008 (-) True AMCG00002597
AMCG00002594 mRNA downstream 213327 22041380 ~ 22109859 (-) True AMCG00002594
AMCG00002595 mRNA downstream 283830 22020576 ~ 22039356 (-) True AMCG00002595
AMCG00002596 mRNA downstream 420589 21901292 ~ 21902597 (-) True AMCG00002596
AMCG00002605 mRNA upstream 5614 22354118 ~ 22380792 (-) True AMCG00002605
AMCG00002606 mRNA upstream 33040 22381544 ~ 22389385 (-) True AMCG00002606
AMCG00002608 mRNA upstream 212613 22561117 ~ 22568988 (-) True AMCG00002608
AMCG00002610 mRNA upstream 250120 22598624 ~ 22620244 (-) True AMCG00002610
AMCG00002611 mRNA upstream 345702 22694206 ~ 22705745 (-) True AMCG00002611
TU155250 other downstream 4333721 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 5483464 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 7376875 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 8668950 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9293780 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 737490 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 833417 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1913061 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1943283 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3955378 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile