RNA id: AMCG00002604


Basic Information

Item Value
RNA id AMCG00002604
length 3575
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00002604
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22394260 ~ 22436807 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGACAGAGCCGTAGTAGTGGGCCGGCGCGGCACCATGGTTCAAACGTGTGGGCTGGTAAACAGATACCGTGGCAAACTGGATTCGCCCGTCTCCATTGCATCCTTCTGCAAAAGCGAAGTCATGAGTCCCCGGCGTCCCAGTGCTGCCTGTGGAAACACCCCTCCCAGACCGGCGGGCGAGACGCAGCAGTTTGATTGCTAAGGGCTGTGCTACCATTGTACTGCTTTTGAAGGCTCACAAAACAGAATCTGCATCGAAAACAAATCACTGTTCATATCATGGTTCCGTGTGATTGACATGACAGAAAGGCTAAACCGACATGAACTCGTGTGATAGGAAAGCCCAGCACGACGCGGCCGCTGCGACTGCCGATCATTCGGAGCACTGGTGGCACAGGGACGGGCTTTATTCTGCAAGTCAGTAGGCATTTGGACGAAGACGCATCTTTTTCAAGTCTGTTCTCGCGAAATCGTCTGTGTGGGACGGGAAAAGGCACACACGGGACTCCTGCTGTCTAAAGGTTGCTCTGGATGGTAATGCCGGGGATCCGATGGGCTCATGCTCAGGATTGTAACATCTGAATAGGCGTCAGCTTGGACAAGTTCAACACAAAGCATGCCAGTGGGATACTAGGACCATACACCACTGGACTGCACATTGctatacaaaaaacagaaatctgcTGGATATCGAGCTGATGCTGGGGATGGAAGGCATTGGGAACACGATGCAGAAGAAGGCTGCGGAGCTGGAGCGCATGGCCGAGGTCCTGGTCACCGGGGAGCAGCTGAGGCTTCGTCTCCATGAAGCCAAGGTCATCAAAGATCGAAGACATCACCTCAGGACCTATCCCAACTGTTTTGTTGCGAAAGAATTGATCGACTGGCTGATCGAGCATAAGGAAGCATCCGACAGAGAGACGGCGATCAAGATTATGCAGAAGTTGCTGGACCAGTGCATTATTCATCATGtCTGTGACGAACACAAAGAATTCAAAGATGTGAAGCTGTTCTACCGTTTCAGGAAAGATGATGGAACCTTCCCATTGGATAACGAAGCCAAGGTTTTCATGAGGGGTCAAAGGATATATGAAAAGCTGATGAACACCGAGAACTCTTTAGTGCAGACAAGAGTGGAGGAGATGGAGACCTTTGAGCGGACACTAGTGGCCTCAGAGTTTGTGGACTGGCTCATCCAGGATGCAGAGGTGACTACCCGAGAGGAGGCGGAGCAGTTGGGCAGGCGTCTGCTGGAACATGGAATCATCCAGCATGTGACCAATAAGCACCACTTTGTGGACGGGGGCCTTCTCTACCAGTTCAGGATGAACTTCAGGAGGCGGCGGCGGTTGATGGAGCTGCTGCACGAGAGGAGCCGCTCCATCCCCGAGAGCCACGACAGCCCCTTCTGTCTACGCAAGCAGAACGCCGATGGCAGCAACACCAGTTTCCTCTCAGTGAGCCCCACCAAAGAGATCAAGATCGTGTCGGCGGTGCGCAGGAGCAGCATGAGCAGCAGCTGTGGCAGCAGTGGATATTACAGCAGCAGCCCCACGCTGAGCAGCAGCCCACCTGTACTCTGTAACCCCAAATCAGTTTTGAAAAGACAAGTCAGCCCTGAAGAGCTGCAGACCCCTGGAGGCCCCTACATGAAGAAGACATTCACAATTGTGGGAGACGCAGTGGGCTGGGGGTTTGTGGTGAGAGGAAGTAAACCCTGTCACATACAGGCAGTGGATCCCAGCGGCCCTGCAGCAGCAGCCGGAATGAAGgttTGCCAGTTTGTGGTTTCTGTCAATGGGCTGAACGTCCTGTCCTTGGATTACAGGACCGTGAGCAACCTCATCCTGACTGGGCCACGAACCGTTGTTATGGAAGTCATGGAGGAAGCCGATTACTGAAACAGGAAATGAGGGCCGCCTCCTAACTGGTGGGGAGCATCTGACAAACCAAAGAAACCCCAGCACAATCCACCTCCACTCACAATCCTCCGAAACTCACCTCCGCTGTGATTGTGTCCGTATGGCATCATCAAAAGCATTAAGAGAGTGGTTTTCAAAGAGGCTGAATTTCATACAGCACccccttttgttttgtgtataagGTTGAGGGGGAGTTCAGTAGGTTTGATGCTCCCCCACGGAGGAGAAGCAGGCACTGGCGCAGGGAGATGCATAGGAGCCTTATACAAGTCACCTGACTGTGCTTCCTCCCCGAGCCTTGACTGTGCTTTCCATGTCCATTAAAAAGCCCTCCCTGTTAGCTGTTAGGTAAACAATTATCAATGAAGGCTTgcttgtgtgtgaaaatgtgttgcttGATAATGCTTGATCGCTTTATAGAAAGTCGTCTTTTTATAGCAAGTGCGCTGTAGATGCAGAATCGATACGCCCCCGAAAAGACTACAGTATGTTAATgggaatgtttgtttttggggACGTATCTTATACAAAATCATAAGTGAAATGATTTGAGTTGTCCAGTTTGGAGAGGGTCACCACAATGGGTCATTGCATGGGGTAAGGTGAGAGGGGGTTTGGGGCAATGCATGGATCGTGGCAGTGTACTCTATAGGCTTAGCATCCTATTGGCCACAAGGGTAGAAGGCGATGGTTTTCCCCTCAGTACGCAGGCACCCAGTGAGACTTATTCCTCCTGGCGAAGTGTGAACAAGACATCATCTCTTGTGAAGGGCAAAAGGAGGCCCTCATCAGATGGCGTGCCTTCATTTTCATCTTCATAAACGTGGGGTAAAGTAAGGAACTGGTTATCGtaaatttgagatatctgagGAAGAGGATGTGACTGGAATCTTGCAAAATGCGTTTCTTTCCAGACGGGAACCTTTTCTGGGTTTCCAATGTTGTTCATAGTAGGGCGATATCTCCAAGTGTGagtcaattgtattttttgtcatttgtgcTTAGCTGCAAAAAGTACATTGAATATTCTTCGTGTGAGTTTGTGTAAAAGTATAAGGCAAAGCTCTTTCTACTTTTAGTGGGGAATTGTAATCTTCTCaactttttaacattgtttaataCAGTTCGGTTTCATCTGCACATATGCACTAGGTAAGTCAGAAAATGACTGTCCAGTCCTTCACTGTGCGTTGGAAAACTACATTTATAAGGGAGAGTATTTTTAGgcacagtttaaaaatgtggaTTTATATCTACTacttaaataatacatcaacATACTGTTTAATAATTAGTGAAATAGTAATTAAACATGGTATAATTTTTTGTAAACTAAATGAGTATAGCCTTTGACTAATGAAAAGCACTTAATTTCCATGTTGGCCAAAACTTAAGCTGAAACTTCTGCCTATATGTACAAGTGAATATTGATCAACCTAATTTTGGAGATTAAAAATCTCAACAGACACTGCCGGGACCGGTAAGGCTAAGCTTCACATAATGTAGCTGCATGATTACAGCTGGGGAAGCAACTTTGCAGTAAAGTGTATGATTTGTATGATAACTAACAATCGGTATAACAGTGTAATAACAATGATGAAAACCATCATTTTAAAAGCGCTTTTTTTGTGTAGCACTTGCGAAAATACAC

Function

GO: NA

KEGG:

id description
K20402 DEPTOR; DEP domain-containing mTOR-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156041 lncRNA upstream 56302 22333949 ~ 22337958 (+) True G124494
TU155942 lncRNA upstream 583439 21805620 ~ 21810821 (+) True G124408
TU155939 lncRNA upstream 598303 21795315 ~ 21795957 (+) True G124405
TU155936 lncRNA upstream 599058 21794994 ~ 21795202 (+) True G124403
TU155889 lncRNA upstream 739535 21653782 ~ 21654725 (+) True G124364
TU156090 lncRNA downstream 142 22436949 ~ 22438781 (+) True G124534
TU156156 lncRNA downstream 215919 22652726 ~ 22652942 (+) True G124590
TU156173 lncRNA downstream 423116 22859923 ~ 22912679 (+) True G124601
TU156235 lncRNA downstream 550738 22987545 ~ 22990098 (+) True AMCG00002622
TU156236 lncRNA downstream 550738 22987545 ~ 22990098 (+) False AMCG00002622
AMCG00002600 mRNA upstream 89282 22301022 ~ 22304978 (+) True AMCG00002600
AMCG00002601 mRNA upstream 124527 22265856 ~ 22269733 (+) True AMCG00002601
AMCG00002599 mRNA upstream 139520 22242277 ~ 22254740 (+) True AMCG00002599
AMCG00002598 mRNA upstream 238239 22150796 ~ 22156021 (+) True AMCG00002598
AMCG00002590 mRNA upstream 578772 21812578 ~ 21815488 (+) True AMCG00002590
AMCG00002607 mRNA downstream 47480 22484287 ~ 22548140 (+) True AMCG00002607
AMCG00002609 mRNA downstream 128015 22564822 ~ 22596288 (+) True AMCG00002609
AMCG00002618 mRNA downstream 467222 22904029 ~ 22906512 (+) True AMCG00002618
AMCG00002612 mRNA downstream 490482 22927289 ~ 22945921 (+) True AMCG00002612
AMCG00002613 mRNA downstream 510396 22947203 ~ 22951828 (+) True AMCG00002613
TU155679 other upstream 2118005 20274089 ~ 20276255 (+) True AMCG00002573
TU155541 other upstream 3261902 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 3555729 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 4409530 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 5434178 16958161 ~ 16960082 (+) True AMCG00002500
TU156269 other downstream 631317 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 715841 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 1241128 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 1985445 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 3838784 26275591 ~ 26278973 (+) False AMCG00002684

Expression Profile