RNA id: AMCG00002606


Basic Information

Item Value
RNA id AMCG00002606
length 1527
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00002606
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22381544 ~ 22389385 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACGCCCATATGACGTGTCGCTCATTCCGTGTCGCTCATTGGACAATCCCGTTGTCAATCACGTTTTCCGTTTCCTTCCTGTTACTATTGCGGGAAAGTTGAACAAGGAAGCGGTGTATTTTGCTGTATATGAatggttgttattatttttacgGCCAGGAAAAGTGTGCTTATATCCCACAAATATGAGGACTCTAGAGGAGGTGCAGGGCACATTACAAATCGCCAAACTCAAAGAAGAAGATTTACATCCAGTCGTGCATTGCTTAACGTTCAGTGAAAGCGTGTCGTCTGGGGACTATTGCCTGATGGAATTAGATGAAACCCTTTGTAAACATATTGAAGCCGGCAAGAGCCTGGTTATCAGGGGCGATAAGGACGAACATGCCGTGCTGTGCAGTGAAGACAAGACCTATGACCTGAAGATAGCTGACACATCCAACCTGCTCCTCTTCATTCCTGATTGCACAACATCGGGCCTTCTCCCGCAAGACACGGGGAAGAAGCTCATTCAGGCTCAGATTTCAGGTTTCTCTAATTCCTATTGGGAGCTCAGACGATGTCGGCCCAAGTTAAAGAAGCTGAAGAAGCTCCTGATGGAGAATCCATATGAAGGACCTCTAGCCGATCAAGAGGCAGGGGGCACTAAGCAAGTGAAGAAGAACTGTTGGCCCAGCTTCAGAATATTCATGCCTGCAAAATTGACGGTATGCTGCTGGAAGATCCTAGATTTTGAATACGAGATACAAATTTTGGGCCATATCACACAGCTGGTGGACTCGGAGTCATGGTCCTTTAGCAAAGTTCCCCTGAGTGTGTGTCTGGAGGAGCTGGGGCCTCTTGAACCAAaGGAGATGATAGAGCACTGCTTAAACTGTTATGGGAGGCGTTACACAGACGAAGCGGGTAGCGTTTCCTTTGCGCTGAATGAAGACAAGGTATGCCAAGCCATGGCCCAGATGCTGTTGCAGAACGCGGTGAAGTTTAACCTGACGGAATTCCAGGAGGTCTGGCAGCAGAGTGTCCCTGAGGGCATGACCACGAGGCTGGACCAGCTGAAGaGTATGGCTCTGGTGGACCGGGCCTCGAGGCCAGAGACCATCTCTCTGCTGAGAGTTGAGGACCTGCCTGAGGACACACAGGAGAGGTTCAATTGCCTGTTTGCCATGCGAGAAAAGTGGACTGAAGCCGATATTGCaccatatatacaGGACTTATGTGGTGAAAAGCAATCGACCGGAGCCCTTTTAACTAAATATGCTCGTACTTCCATGCAAAGTGGGGTGAAGGTTTACAATTCCAGAAGACCGGTAGCAACCTGAGGaactttattctgttttttgtgtttgtttgtttcctgtcagGCTGTATTAGACTCCCAATTGTTTTGCATACAATTTGTATCATTGATTATAAGAAAACTTGTATGGCAAATTCATTGTTTGTCAAAAATGTActtcacaaatataaatacaaaatctactGATTGGTATGGTGCAGTTGgtgaataaatgtaatgtttttta

Function

GO:

id name namespace
GO:0034088 maintenance of mitotic sister chromatid cohesion biological_process
GO:0006275 regulation of DNA replication biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11271 DSCC1, DCC1; sister chromatid cohesion protein DCC1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155970 lncRNA downstream 427873 21941177 ~ 21953671 (-) True G124434
TU155967 lncRNA downstream 455688 21925607 ~ 21925856 (-) True G124431
TU155965 lncRNA downstream 462629 21918700 ~ 21918915 (-) True G124429
TU155964 lncRNA downstream 479321 21901665 ~ 21902223 (-) False AMCG00002596
TU155935 lncRNA downstream 586556 21794773 ~ 21794988 (-) True G124402
TU156091 lncRNA upstream 47501 22436886 ~ 22438729 (-) True G124535
TU156148 lncRNA upstream 208614 22597999 ~ 22598555 (-) True G124582
TU156157 lncRNA upstream 264097 22653482 ~ 22653719 (-) True G124591
TU156251 lncRNA upstream 607434 22996819 ~ 22999108 (-) True G124669
TU156319 lncRNA upstream 749233 23138618 ~ 23296115 (-) False G124719
AMCG00002605 mRNA downstream 752 22354118 ~ 22380792 (-) True AMCG00002605
AMCG00002603 mRNA downstream 33040 22323186 ~ 22348504 (-) True AMCG00002603
AMCG00002602 mRNA downstream 58494 22302321 ~ 22323050 (-) True AMCG00002602
AMCG00002597 mRNA downstream 163536 22178932 ~ 22218008 (-) True AMCG00002597
AMCG00002594 mRNA downstream 271685 22041380 ~ 22109859 (-) True AMCG00002594
AMCG00002608 mRNA upstream 171732 22561117 ~ 22568988 (-) True AMCG00002608
AMCG00002610 mRNA upstream 209239 22598624 ~ 22620244 (-) True AMCG00002610
AMCG00002611 mRNA upstream 304821 22694206 ~ 22705745 (-) True AMCG00002611
AMCG00002616 mRNA upstream 519805 22909190 ~ 22926813 (-) True AMCG00002616
AMCG00002615 mRNA upstream 565891 22955276 ~ 22958920 (-) True AMCG00002615
TU155250 other downstream 4392079 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 5541822 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 7435233 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 8727308 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9352138 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 696609 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 792536 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1872180 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1902402 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3914497 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile