RNA id: AMCG00002610


Basic Information

Item Value
RNA id AMCG00002610
length 4880
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00002610
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22598624 ~ 22620244 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTAAAATACATGCGGGAGGCAACTCCCTATGTGAAGAAGGGCTCTCCGGTCTCTGAAATCGGCTGGGAGACCCCACCTCCAGAATCCCCCCGGCTTGGCGTGACCTCCTCTGATCTCCCCTCGCCCCCTGCCATCTCCCTCCAGGGAGACAGGAGGTACATCCCCTTGAAAATGTGCTGCGTCACATGGAGTATGACCACCCCAGACCCGGAAAACAGGCAGTTTGAACTTCACTCCCCAGATGCCAAGCACACTGtggttttgaaatgcaaagaCACCGCCACGGCACAGGCCTGGTTCAGTGCCGTACTGTCCGTCACTACGCAGTTTGTTGCCAAGGTGATTGGAGAGGTCAAGGAGCAGACGGGAAGAACAGGGATTGCTGGGAGCCGAGAAATCCGCCACCTTGGCTGGCTTGCCGAGAAGACAGAAAATGAGAAGCAGCGCTGGAAACCAGTCTTGGTGGTGGTGACGGAAAAGGACCTGCTTCTGTATGACAGCATGCCGAGGATGAAGGAGGCGTGGTTCAGCCCGGTTCATACCTACCCACTATTAGCCACGAGGCTTGTCCACTCTGGTCCCGATAAGGGTTCCCCGCAGCCAGGACTGGAGCTCTCCTTTGCCACCCGGACTGGTACCAGACAGGGCATTGAATCCCATCTCTTCAGAGCCGAGACCAGCAAAGAATTGTCCCTGTGGACTAGACACATTGTCACGGGCTGCCACAACTCCGCCGAGCTCATCAAAGAGGTCATCACCAGTTGTGTGTACCAGAACCAGGAGTGCCGACTGACCATCCACTATGAGCAGGGCTTCTGTGTGTCGGCAGAGCTGGAGAGCGGCTCTGTACTAAAACCACTGTTCAGTTACCCTTTCGAGAAGCTGAAGATGTCCTCTGACGATGGCGTTAGGATGCTGTTCTTAGACTTTGGTGGCAAGGAGGGTGAAATTCAACTGGACCTCCATTGTTGTCCGAAGCCCATCGTTTTCATCCTCCATTCCTTTCTGTCTGCAAAGATTGCACGGCTCGGCTTGGTAGCATGAGAGAAGGCTGCCAGGGAATggacagcaaaaacaaattctCCACTGACAGAGTAATCCTGAAGAACAGTAGATGATAGTCTTGCACATGGGAATCAAAAGACTCAAGTTCACTGTGTACAAATGAACATGGGGCGGTGAAAAGCATGGTGAACGGCAAACCGACACCCACAGGAAACAAATGGATCGTGTTTTAAACATTAGATcattaaagtatttaaacagATTACATTACACATGTGcatattgaaatgtaacatGTTAATTActtggtaattttttttttctttcaagaaaaAGTGTATTCTATAGTACTGTAATCACGAAAGGAATTGATAACACTAAGCTGTTTATGTTTTGAATAGAAAAATACTGGAagtattattttgcattcattccagttttgtttgtactttttcagaaaaaaagactGCACTAACCTTAATTTGCAATATGATTAAGGCTAAAAGAAGATTGCTATTCTGTATGATAGTGGTCTAAAACCTTGATTGCAATGTTACATCTGCAGCAGCTAATGTAAATGATGAAGTTTAGTTTGTTCATGCACATGAATtgtagattatttaaaaaaaacaactaaaattaGGTTTTTGCCACCAGTTTGCCTTCATTGCCCCGCAAGGCAGTGCTTCCTGTATATGTACAGAAAATATACTTATTTCCACCCTCCCCCCGCCGCTTCATGGAAATCTAACCATGTTCCAATCACTTTGCCTGGGAGTGCTTTGGATCTAGAATAGggctttttcaatttcaaagatttctTACCTCTTGTGAGAGTCATTGTTCAATCACTGTGATAATTGGACAAAAGAGGTGTCCAGGTAACTAGACTTTCTGAATGTTATCAGTGAAGATGTGCTTCATCTGTGGGACATAAGCTTATACAATTTTTTTCAGTGGAAATTAATATGAAGGAACCATGGCACTGTCTTGAAAGAAAATGAGTTATCTGATTGAGAGTTGTTGtcttctgaatatctgaatgtTCTTAATCATTTAACATAcctacaatacattttgaacctCTCTATTTGTTTAGccatgtggaaaaaatgctCTCACTTATTAATCTAGTTTCCATGAGATTTAATCAACTGATTGTATGTGAATGGGAGACATATGATCATGATGTTCTTCAAATGCTTTTATGATTGCAGTCACCCCCATTTATCAAGCCATGCCCTTCTAATCATAGCTCTCCCAATTCAATCCCATCAGCCTCACCTGTTCACATGTGAAGTTGCTAGTTTTAAATTGGTTGGGAAGATCATGCCCAGGCCAGTCTGAATGGAGGGTCATGGAGGACGACTGATAGGAGGTGTGATTCCTCCTGTGTAGATCTCATCTTGATGAACAGGGGTGAACACAACCCTGAAAGTATTTGAACAGCATTGGAAATGCATAGGTCCCCAATTCTGGTAAAAggtaacaaaatacacattttcacatctGAAAGACAAAAGTGaggttctttttgtttttcacaataacTAGACTTAAAAAAGACTGAAAGATAATCAGACTTGCCAACAAAGCAAATCTTTTCATATATTAATTGctggatttcattatttttaaagaaacataaatcTGTCCTTGGGCAGAAGCAAGATTGACTGAAATTGTTTGTTCTAGGGATGTTAACACTTTTTGTTCCATTGATAATGAGAGTTAGTTTTGGCTTTGGAAACTTAGATTTCTGAAAGGAcaagctaaacaaacaaaaggcaaGGGAATTTCTCAATTGAGCTGCTTTGTTCAGACCTAGAACATGGAAAATCTTGGAAAAGATCCTAGGTAACCAACAATAAGTGCTGGCAGGCAGTTGGGTTCTTCATTGGGTGCAGGTGGCTTTCAGCACGTTGCAGTATTGACCATTGTTGTTGGGCCAAGAGTAGCCCAGCAGTTGGCAGAGTTAATCCAACTATGGGTCGGCGGATTCAGTTCCTGGCACTATTGACAAAGATTTGAGAACTTCACACAGATGTCTGATAAACTTTGTATGGTATAGCAGATGTTTGTGACCAATATAAAACTGGTCATCCTTTGTGGTCAAGAAAATGCACACATGAGaacaatgaaaaatgacaaaCGGAATGCACCTTAAACTATTACAAACTAATTCCCCAACTTATTGTTTCCACATATAGGTGAATGCAGTCTCATAACTAATAGAGTAATGATTCTCCACttctaataaaataagtaatgcttttaaaagacaACTGACATCAATAATAGGCAGTGTGTTACAAATGGAAAGAATGACATGGAAACATCaaccatttctttctttaaaaaaaaatagatatttgagCAATATTTCCAACATTGTCTGTAATTATGGATCCCCAATTGTTCCAAGGTATAGAATTAAAGAATGATTTCAGTTTCAAGTCCTATGAACGCAACAAGAATCTCAGACTGTTGGTTGGTGAGCATTCTAGATCAATACGGATcaaatcctttattttattttcacatttttattttctaaccaCTTGCCAAAGCTTGTGCTTTTTTGATTCAGCTTGCTCTGAGTTTTTAACAGCAAAGCACCCTCACAGCCTTATTGaggcaaataaagaaaagcagtaAGACCATGGACAGTTTGAACATTTGTTTCCATGTGCCAAAATAGTGCCCACAACAATATAATTTGGTGCCTATAGCTGGAACATATGTCCGCATGCGTGAATGCAAAAGTACATACAATCATTTAATGTGGTATGAATGGAGGTGGGTAAGTGGGAAGTTGCCATGATATTGCCTGATATACGATTCCTATCATACTCTGTGTGACCAGGAAGAACAACAAAGATCCAGTGTTCAACCAAGGACAGGAATGCGCTGGCACACACTGCCAGGTCCATTCCCTCCCAGCATACACCATGATGTGAGCACACAGATAAACGACAGCGGAGAACGATGTCATTCTCCAAACATTCAGTTTATTTCTCCGTTGGTCAGATGCCGGCCCTTTGTCCATTATCCGACCAATATTTAATAGGAATAAAAACTGGCTTGGAACTATGCTGCCAAGGACAGAAAGACTTTATTGCGGTCTTTTTTTGTGGTTGATCAATCTGAAACTTGTGTCACACTGTTGTGACATAAAACACTTGCTTCAAGGAGCCGCTTTGCTCTTGGCTTGTTTTGTGGGTGCTTAATCGTTCGCTGGTAACCTCGCCGCCAAGGATTCACTTGACAACAGTGAATGGCTTCTACGTGGCTCATTTCATGGCTGAGAGCTTGGCCTGTAATTGAAAATTTGTGCTTCACATTGTACTGAAAAATGGTATTCAGCCTATTTGCTGAATTTGCACCACTGGCTCGGGTAGGAATAAACTCGCCAACTACGATACCGATGTACATAAGAGTACCGTTGAAATGGTTGAAgattaaaataagatttttttaaacatcaaaagAGTTGTTTGCCAGGTAGCTGAATGTAACGACACAGTatcattgtatttcaaatactGATATTGATAAAGTGGATGTTTTCAAAGAAATCCCACTTAAGTTCTCATCTCAAACTTGTTTTCATGGCACTGTAAGGACATCACTTAACACTGACTATGCCagattacatatatatgtattcacccTCCATAACTCTATCCATAAACAAGCATACATCTGAAGAAAGGACTCAAAAAGAGGAAGTCAATCCTATGAATATCTGTGAACTTAAACAAGGGAAAGCTTCTCTCACAAATAtgtctaattaaaacaaagtaaacttTAAATAAGGTTTGTTCCCTGCCATGAATGTCTTCCACAAGTGTCATTGCTTCATCtataagga

Function

GO: NA

KEGG:

id description
K24064 SNTB; beta-syntrophin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156148 lncRNA downstream 69 22597999 ~ 22598555 (-) True G124582
TU156091 lncRNA downstream 159895 22436886 ~ 22438729 (-) True G124535
TU155970 lncRNA downstream 644953 21941177 ~ 21953671 (-) True G124434
TU155967 lncRNA downstream 672768 21925607 ~ 21925856 (-) True G124431
TU155965 lncRNA downstream 679709 21918700 ~ 21918915 (-) True G124429
TU156157 lncRNA upstream 33238 22653482 ~ 22653719 (-) True G124591
TU156251 lncRNA upstream 376575 22996819 ~ 22999108 (-) True G124669
TU156319 lncRNA upstream 518374 23138618 ~ 23296115 (-) False G124719
TU156386 lncRNA upstream 1035740 23655984 ~ 23663572 (-) True G124765
TU156401 lncRNA upstream 1253434 23873678 ~ 23928150 (-) True G124779
AMCG00002608 mRNA downstream 29636 22561117 ~ 22568988 (-) True AMCG00002608
AMCG00002606 mRNA downstream 209239 22381544 ~ 22389385 (-) True AMCG00002606
AMCG00002605 mRNA downstream 217832 22354118 ~ 22380792 (-) True AMCG00002605
AMCG00002603 mRNA downstream 250120 22323186 ~ 22348504 (-) True AMCG00002603
AMCG00002602 mRNA downstream 275574 22302321 ~ 22323050 (-) True AMCG00002602
AMCG00002611 mRNA upstream 73962 22694206 ~ 22705745 (-) True AMCG00002611
AMCG00002616 mRNA upstream 288946 22909190 ~ 22926813 (-) True AMCG00002616
AMCG00002615 mRNA upstream 335032 22955276 ~ 22958920 (-) True AMCG00002615
AMCG00002614 mRNA upstream 339471 22959715 ~ 22968693 (-) True AMCG00002614
AMCG00002617 mRNA upstream 351261 22971505 ~ 22986571 (-) True AMCG00002617
TU155250 other downstream 4609159 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 5758902 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 7652313 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 8944388 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9569218 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 465750 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 561677 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1641321 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1671543 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3683638 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile