RNA id: AMCG00002611


Basic Information

Item Value
RNA id AMCG00002611
length 3457
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00002611
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22694206 ~ 22705745 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaaaaaaaaaaacctctacCAGTCAACTGACAGATGTATCACCATATATACATACctacagtatgtgtgtataatatatgagaagaaaacaagaaaaagaaaacttgaattaaaaaaaaaagcaaattaaaagaaaactttgGAAACTGCACTGCCTTGGAATTTGTGAAGTTTTCTGTGGGCTCTTACTAAATTGCCTCAAAGTCGCTTTTGAAAAGTCTGCCTGAACTCCAGTCCTGTAAAGACATCCTCTCCACACAGCCAGAAAGCTGCTTCCAAGaTGAGGTGTGATAAAATTATCACCTACTTGAGGATCTTCGGAACGACGATGTTTGGGGTGTCACTTCTCCTGGGAATCACTGCTGCCTATATCAAGGGCTACCAGTTCATCACAACAGACAATTACTATTTCTCCTTTGGACTTTACGGGGCTATCCTAGCCCTGCACCTCATCATCCAAAGCCTGTTCGCCTACTTGGAGCACAGGAAGATGCGGAGATCCCTGGAGACCCCcattaaactgaacaaaaccCTCGCCCTCTGCATCGCTGCTTATCAGGAAGACCCCAACTACCTGAGAAAGTGCTTGATTTCAGTCAAAAGGCTCACATACCctgggataaaggtgatcatgGTGATTGACGGTAATAACGAGGATGACAACTACATGATGGACATCTTCCGGGAGGTCATGGGGAGAGACGTGGCCGCTTCTTATGTTTGGAAAAGCAACTTTCACCACAAAGGCCCCGAAGAGACTGACCAGTCGCACTTGGAGAGCAAGCAGCATGTGAGCCGCTTGGTCTTGTCCAACAAATGTGTGTGCATCATGCAGAAATGGGGCGGAAAGCGAGAAGTAATGTACACTGCTTTCAAGGCCCTCGGGAGGAGTGTGGATTATGTGCAGGTGTGTGATTCAGACACCATGCTGGACCCTGCCTCATCTGTGGAAATGGTGAAAGTGCTCGAAGAAGACCCAATGGTGGGGGGAGTTGGGGGTGATGTCCAGATTCTGAACAAATACGAGTCCTGGATATCATTCCTGAGCAGTGTCAGGTACTGGATGGCTTTCAACATCGAGAGGGCCTGCCAGTCCTACTTCGGTTGTGTGCAGTGCATCAGTGGACCCCTAGGGATGTACCGCAATTCTCTCCTCCACGAGTTTCTGGAAGCCTGGTACAACCAAGAGTTCTTGGGCAGCCAATGCAGCTTTGGAGACGACCGGCACCTCACCAACCGGGTACTAAGCCTTGGATATGCCACCAAGTACACTGCTAGGTCCAAATGTTTAACAGAAACCCCAATCAAGTACCTACGGTGGCTGAACCAGCAGACACGGTGGAGTAAGTCCTACTTCCGAGAATGGCTGTACAATTCAATGTGGTTCCATAAACACCACCTGTGGATGACCTACGAAGCAGTGATCACTGGctttttccccttcttcctcATCGCTACGGTGATCCAGCTCTTCTACCGAGGCCGCATATGGAACATCCTGCTGTTCCTGTTGACCGTTCAGCTGGTAGGCCTCATCAAGTCGTCCTTCGCCAGCTGCCTCCGTGGAAACATCGTCATGGTGTTCATGTCATTCTACTCAGTGTTGTACATGTCAAGTCTGCTTCCGGCCAAGATGTTCGCAATTGCAACGATAAACAAAGCGGGCTGGGGGACGTCAGGGAGGAAAACGGTGGTGGTCAATTTCATAGGCCTCATTCCAATTTCGGTGTGGTTCTCCATCTTGTTCGGTGGAGTGCTCTACACAATATACCAAGAGACAAAAAAGCCATTTTCTGAGGCCGAACAGACTATTTTAATCATAGGTGCAATATTATATGCCAGCTACTGGGTAATGCTCTTGACATTGTACGTGGTGCTCATTACCAAGTGTGGGAGGAGGAAAAAAGAGCAGCAATACGACATGGTACTTGATGTATGATATCCTCCTTCCCCTCTTCATGTTTACATTGTGAAGTTCCTGACTTTTCATCAGAGGATGCTTGGCAGGTGACTGGTAGTGATGTCACCAGGAAAGACTAATCACTGCTGCTGTGACAAAAATCAAAGatgattacatttgttttttgttaaggTTGGGATAAATTTGCCAAAGTAGAACCTTGATTTAAAACCACCAAAAACAACTGACATGGAACTGGCATGAGTTTTAAATTCCTATGCACTTTCACGTTTCACTCTCATCGTGCATAATGCTTgacagattaaatgaaaaaatatatacctcaGTGGTTATGATTGCATTGTGTGGGTGAGTGGGAGGCTCATTgttgtttcaaataatttatctatgaaaataatgtgggtctgtttgtttacttgtatttttttttaaatagttctaATCTATGCCAAAGGTGGACTTTCCAGCAAGTTGGTCATGCTGTAGCtagttcatattttataattatgtgtatttgtattgcaattTATATAgacataatgtttatttttgcttagCCACCAAAGAGTTTctattttcattccttttttatataaaaataaatgaataaataaataaaattgtgcatgggcaactgttttgttgacaaaGACCTTTGTATCTGaccaaaaatgtgaaatgttatgCTGTGTTTTACGCGTTCGTAATTATAGCAATAAATGCAATTCAGAGAATAAATTATAAGTTAACAAGAAAGGTGATGAacctgtgttttaaatgtggtgTACATGGAGGGGAAAACAGCATATTTATGTTAAGAAGCCTTCTGTGGTTAATAGCTTTATTTACTGGAATAATGATATTGGAACAATTctgaatatttgaaaaacaggatTTTGCAGGATCACAGCTATTTGTTGGAAGAAATGTTTTGGGACTTTACAGGTCATATATAGAAGTATACTTCAGTATTTCTTTGCTGAAATAGCAGTGTAGAAGAAAGTGAAAGAGCCTTCAAGGAACCCTATGGTAAAGCAATAATAAAGGAGAATGCAAATTAACCATTAAAATCCTGGACAGAACCCAATTTTGcacaaaactaatttaaaaatttaACACAAATCAGGGTTTCCAAAGCTATCCACTAAACAATTTGCTCAATTCAGTGCTTGTGCaatgtgattattttgtaaatacaattttgaagaTAACTGAATGAAGAGGACTTTGATGACACTACATATTTTTACTGCCATTTGGATCATGATTTAGAGATTAAGAATTCTTTTTGTAAACGAAAacgatattttgttttgtttttgccaaacATACATAGGCAATATCGATATAAAGCACTTTTGTGATgtgcaaaaataaagatatgTTGCTTACTATgcaaatgtgtacatatttggttatttattcCCTAGTTGTCTGTAtgttatgtgtgtatttatttaaatagatgtttagacaatgtcaaacaaatCTTTCCAAGTCTCCCTCTACATTAGAAAGCAGAGAGCAAAT

Function

GO:

id name namespace
GO:0021535 cell migration in hindbrain biological_process
GO:0001756 somitogenesis biological_process
GO:0035810 positive regulation of urine volume biological_process
GO:0070295 renal water absorption biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0003181 atrioventricular valve morphogenesis biological_process
GO:0030213 hyaluronan biosynthetic process biological_process
GO:0060030 dorsal convergence biological_process
GO:0001947 heart looping biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0050501 hyaluronan synthase activity molecular_function

KEGG:

id description
K00752 hasA; hyaluronan synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156157 lncRNA downstream 40487 22653482 ~ 22653719 (-) True G124591
TU156148 lncRNA downstream 95651 22597999 ~ 22598555 (-) True G124582
TU156091 lncRNA downstream 255477 22436886 ~ 22438729 (-) True G124535
TU155970 lncRNA downstream 740535 21941177 ~ 21953671 (-) True G124434
TU155967 lncRNA downstream 768350 21925607 ~ 21925856 (-) True G124431
TU156251 lncRNA upstream 291074 22996819 ~ 22999108 (-) True G124669
TU156319 lncRNA upstream 432873 23138618 ~ 23296115 (-) False G124719
TU156386 lncRNA upstream 950239 23655984 ~ 23663572 (-) True G124765
TU156401 lncRNA upstream 1167933 23873678 ~ 23928150 (-) True G124779
TU156515 lncRNA upstream 1705284 24411029 ~ 24411336 (-) True G124873
AMCG00002610 mRNA downstream 73962 22598624 ~ 22620244 (-) True AMCG00002610
AMCG00002608 mRNA downstream 125218 22561117 ~ 22568988 (-) True AMCG00002608
AMCG00002606 mRNA downstream 304821 22381544 ~ 22389385 (-) True AMCG00002606
AMCG00002605 mRNA downstream 313414 22354118 ~ 22380792 (-) True AMCG00002605
AMCG00002603 mRNA downstream 345702 22323186 ~ 22348504 (-) True AMCG00002603
AMCG00002616 mRNA upstream 203445 22909190 ~ 22926813 (-) True AMCG00002616
AMCG00002615 mRNA upstream 249531 22955276 ~ 22958920 (-) True AMCG00002615
AMCG00002614 mRNA upstream 253970 22959715 ~ 22968693 (-) True AMCG00002614
AMCG00002617 mRNA upstream 265760 22971505 ~ 22986571 (-) True AMCG00002617
AMCG00002628 mRNA upstream 284508 22990253 ~ 22996520 (-) True AMCG00002628
TU155250 other downstream 4704741 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 5854484 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 7747895 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 9039970 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9664800 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 380249 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 476176 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1555820 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1586042 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3598137 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020686 True 4614 mRNA 0.40 4 NC_007127.7 15369634 ~ 15387459 (-)
grasscarp (Ctenopharyngodon idella) CI01000016_06508677_06514489.mRNA True 2376 mRNA 0.44 5 CI01000016 6508137 ~ 6514489 (-)