RNA id: AMCG00002615


Basic Information

Item Value
RNA id AMCG00002615
length 2023
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00002615
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22955276 ~ 22958920 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACTACAACTTGCTGAAGATAGTTTTTAATTCCACAGATGGAGGTTTTTGGCTTTGATTTTGACGATTCCGTATTTGCAGAAACCCGAGATAGGGTTGCAGTTACACTTTCTTCTTACAAGGCGAAATACTGTGAGCCAGAGtgGTTTTGTGAAGAAGTCAGCACGGACGATGAGCTTGAGAAGCAGAAAGTGTTTAAATTCAGAGCAGACCTGGCCTACAGACGGCATGACTATGAGAAAGCTCTGCGTGAATACCTGAACTGCTTCTCTCTGGTGCCGGACAGCAACATTGCCATCAGGCGCGACGTTCTGGAGAGTCTGTCTCGGTGCTACTGTCGACTGGGCAGACCGGAGAAGGCACTGGAGATTGCTGAGCAACTGAGGAAGGATGCCACAAATACGGGCCACCTCTCAGCAGTGTTAAACCTGCAACTGACCCTTCACTGCAGCAGCGGAGAGCTGAGGAAACAGATCTCTACTCTGCAAGATCTCATTTCCCTCATGCCTTGCAACCCCTGCCACTGGAAGAAATTGGGAATGGCCTACTTGAACATCTTCAAGTCTCTTCCCTCCTCTGGCCCAGCAAGGACTGCCACAGTCAGTCCTGCCCGCCCTGATGGCTGTAATGGAGTAGCAGATCCTTCACAGCGGCGCTCCAGTGACTGTCTGGAGGGTGTAAGCATCGCGGGACCTTATACTAGACATGGAGAGGAGGAGAACCCAATCTCTGACAGCCACAGAGGAGAGCCGGAGGTAAAGACCACAACGGAAGAACAGGGGAATGAAGAAGCGCAGGACGTCTGGCTGAGGGCCTGCGTTTGTTTTGTACGATCAAGCCTGCTGTTCAGGATGGTGAAATTCCAGCAGTCTTCCTTCGTGTCTCAAAGTAACAGAAGGGCTCGGGAGGAGATCGAGGGGGCGCTCCGCACATTGGACCTAAAGGAGGAGGTACTGCGTGTTATCACAGAGGTGATGGGTGAAGACCTCGTCTCTGAGAAGCTGAAAGAGGAGAGTCAGGAGACGGAGAATTGCTCGTCTCTGGCCAGTGTACAGGTGCCCTGTGAAACTGACTTTGAGGAGAGGTGGTTTAACAGACTGAAACGCATGGTCTTTAAATCTGGTAACCAAGAGCTGCTTAGTTACAGTGACACAAAAAAGAACGAAGGATAATTCCTTTCGAAAGGGTTTCATGGGATGTAAATTGGCTGACTTTGATTCTCATTCTTGCGGATTCCCATCTGCAAAAGCCTTTAATGCATTTTGGGCTGAACGGGCGACGGCACGTCCGTCTGGGCAGGTTGCGGTGTACTGAGCACAAGGCTCCGAACAAAGCACGGCTTGTTGTCTGAAAAGAGGCAGGCTGGTTGTTACGGTTTTAGATAGGCCGCTGTTTTCATTCCAGACCAAACAGCGGGTCTGAGGGAAGGGGACTGGTTAGTTGGGAGTCACTAGTTGAGATTCCATAGTGTACAGATAAAAGACCGCAGCCACACAAGACCGAAGAATACAAAGAAGACTGAATGACTCAAACCTTTTACATCTCAGTGCTTCTGTATTTCTCTGACTGACTGCCTCAAGGAATGAACTGCATTGGAGCATTTCTTTGTTAATCTGAGCCTCACTTATTAAGACTGTGTTGTCATCAAGGTCtcagacagaaaatacatttagaaaaaaccTGAtttaaatagttacatttttgtataatcCTTCCTGTATGCACAATAGATGAAATTGAACTCTCGGTGGAGTGGAGTCCTGTGATTGGTCTGTGTGAGGCCACACTGATGAGGTCACAGCTCCTCCCATTGCATGATTATAATTAGAAAGTGGCCGTAGCTATTaacaaatttagtttttattgcatTAACTATACCAGTTGTTTATATGAGCCTATTATGATGCATGataatgtaaattgttttactactattttaataaaatatttattttgtaactaaATTTTAAACCTTGCATTTGATGTATTGTTATTTGACAAAATATCGCTATAGAATAATAT

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156157 lncRNA downstream 301557 22653482 ~ 22653719 (-) True G124591
TU156148 lncRNA downstream 356721 22597999 ~ 22598555 (-) True G124582
TU156091 lncRNA downstream 516547 22436886 ~ 22438729 (-) True G124535
TU155970 lncRNA downstream 1001605 21941177 ~ 21953671 (-) True G124434
TU155967 lncRNA downstream 1029420 21925607 ~ 21925856 (-) True G124431
TU156251 lncRNA upstream 37899 22996819 ~ 22999108 (-) True G124669
TU156319 lncRNA upstream 179698 23138618 ~ 23296115 (-) False G124719
TU156386 lncRNA upstream 697064 23655984 ~ 23663572 (-) True G124765
TU156401 lncRNA upstream 914758 23873678 ~ 23928150 (-) True G124779
TU156515 lncRNA upstream 1452109 24411029 ~ 24411336 (-) True G124873
AMCG00002616 mRNA downstream 28463 22909190 ~ 22926813 (-) True AMCG00002616
AMCG00002611 mRNA downstream 249531 22694206 ~ 22705745 (-) True AMCG00002611
AMCG00002610 mRNA downstream 335032 22598624 ~ 22620244 (-) True AMCG00002610
AMCG00002608 mRNA downstream 386288 22561117 ~ 22568988 (-) True AMCG00002608
AMCG00002606 mRNA downstream 565891 22381544 ~ 22389385 (-) True AMCG00002606
AMCG00002614 mRNA upstream 795 22959715 ~ 22968693 (-) True AMCG00002614
AMCG00002617 mRNA upstream 12585 22971505 ~ 22986571 (-) True AMCG00002617
AMCG00002628 mRNA upstream 31333 22990253 ~ 22996520 (-) True AMCG00002628
AMCG00002627 mRNA upstream 41807 23000727 ~ 23012696 (-) True AMCG00002627
AMCG00002626 mRNA upstream 60026 23018946 ~ 23028347 (-) True AMCG00002626
TU155250 other downstream 4965811 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 6115554 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 8008965 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 9301040 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9925870 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 127074 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 223001 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1302645 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1332867 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3344962 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile