RNA id: AMCG00002616


Basic Information

Item Value
RNA id AMCG00002616
length 4335
RNA type mRNA
GC content 0.40
exon number 8
gene id AMCG00002616
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22909190 ~ 22926813 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAACAGGAAGTGCCGCTCTCTCACAAACTAGCCCTGAGAGGCCACGTCAGGAAAACTTCAGTCACAGAGAAACGAAGACAAACGTCAATACTATCTCCAAATATCTCCCCCCGACAGCGACGCGGGGACCAGGGGGCTTCTCGGTGTTTCCTCCCTTTGGAGCTAGACAGGCTTCTGGTGGACTGTGGGAAGTGGGTGTCTGCACAGCCAAATCTACACAACAATGTCCGATATCGGGGACTGGTTTAAAAGCATCCCCTTCATTACCAGATACTGGTTTGCTGGGTCAATTCTAGTACCTCTTATAGGGAAACTGGGACTGATTAGCCCCGTGTACCTCGTCCTGTGGCCGGATGCTTTCATTAACAAATTTCAGATATGGAGACCATTCACCTCAACACTGTACTTCCCTGTGGGCCCTGGGACTGGATTTCTGTACTTGGTCAATCTTTATTTCCTATACCAATACTCCACAAGACTTGAAACAGGTGCCTTTGATGGGAAACCAGCAGACTACATATTTATGCTGATTTTCAATTGGATCTGCATTGTTATAACGGGATTAATAATGGACATGCAGCTTTTGATGATTCCTCTGATAATGTCAGTCCTGTATGTGTGGGCCCAGCTCAACAGAGACATGATTGTGTCCTTCTGGTTTGGCACCAGATTCAAGGCCTGCTATCTGCCATGGGTGATTCTTggattcaattatattattggAGGATcCATTGTTAATGAGTTAATTGGAAACCTTGTTGGGCACTTGTATTTCTTCCTGATGTTCAAGTATCCCATGGATTTGGGAGGGAGAGAATTTCTGGCAACACCACAGTTCCTGTATCGCTTCTTCCCCAGTAGAAGGGGTGGAGTCTCTGGGTTTGGCGTTCCCCCACCCAGCAGGAGACCTGCAGCCAATGAGCAGGGCGGGGCTGGGGGTGGGCGGCACAACTGGGGCCAGGGCTTCAGGCTAGGAGACGACTGAGGAAGGAACTGCTCAACATGGAGAGAGGACTTTAACGACGGCACAAATGAATTGATGCATCACAGCAGTGGGGGGTTTTTGTacaaaagtttgtttttccccctgacTGCCTGGGATGGACTGTAAGGAGCAACAGTTGATCCAGCAGTAGTGGCAAAACTGAAAACcagcatgattttttttttttttttttttcctgctttcacATTACACTGTACACATAAAACTGACCTATTCATAATTACAGTCAAAGACGTTGATTTTCTGAAATTGCGGTTGTGAAGAGATGTGTGCAGCCGGCCGAAGCCACTGAGGTTCCTTTGCACAGGTTTCTCTGAAAATGACAACACGCCAAATTTCagctttttaagattttttttccattttagtcTTAATACGCCCaatattatagattttttttttttttttttgaatgtgCTGTTTCACTACCCTATGAAGATTGGCTCTTTTTTGAGTGGTGAGTCACTATATTAGCTTTTGCATCTACTTGATGTAGGAGGAAAGTACACATTAAAGTAACAAAAGTTGTCTTATTCCTAATTTTAAAGTATGAATTGGTTCTTTCTTTATCTGTCCAGTTCTCCAGTAGCTTTTAATAACTGTTTAATGTGTTCGGAGATatggaaacaaataattattttaatttgattgtttttcattcctGCCCGTCACATTCCAAAGTGCATTGCCCCCTGAAAGGAAATCTAACGCACACCTTTCTCTGCATTGTCTTATGCTAAACAGTTGCTCACAAACATGAAGCTTAGCTTTGCAAACCAAATCAACTTTGAAGtggtaaaagaaaatgcagtgtaACAGAAGGCTAGGTGATTTCCCAACTAATGGTGACAGTTCAAAGGGATTCATTGGATTATAGGACCGATCAGATGTCAAATGATTTACATTTGCTCAGAGCAGATGCACAAAACCCATCTCTGGCATTCTGCTACGTGGGGTTGTCTTTTTCTGTAGTCCTCCACTGTGTACTGCAGATTGTGGTAATATGCTGAGGAATATCTGGCACGTTTCAGTCTTAAAAGCATTCAGCCAGTTTACAAATTGCTAAAATACTGTTCCCAAGTAGAATACATCTTTAAATGTTCTTGCTTTTCTTTCGTAATATTAATTGTTGTACAAAGGCCccttaaagaaaaatgttcagACCAATTGTAATCTGAGACAGATTAAATGAGTTTTACTGTCTGATGTACATGCTCAGATTAACCAATTTTCAAAGCCTTCACTTCGCAGTAGTTTCTTTCTTGCAGAACCAGATTGAAATGAGAATTCATGCACATGGACATCTCTCCATGGAAGATCCCTCGACTTACAAATAATGCAGCAGACAATTCtactgtattgtaaaacattgtGTGAGTCTTAGAATTGAATTTGTTAATTGTCAAAGCTTTAGGTATCGTcttgttaaatttaaatatttgaatattcagTTTATCTAAGGACATTTATGCCCCATGCGTCCGGCTGCGGACCCATAAATGggcgtttccactggctaagcgtccggatgtgtccaggttttgtggccggttaactatGTGCTGCCAGACGTGGCTGTCAGCGTCAGTcaccccactgaggaaatacttctctttcagaagcgATGTGCGCTGGActtgagacagacagggaagagatcagctacattatgtcggaagatataatctcaaatgcCGTATGGGATCatgaagaaattagttttattagcagcacaGAGTAAAATCCACCtacagaaacaatttctgcttacagttaatatccaagtgtattaaaaacgtggatttcacaggaccgttgcagtgccgtgactagttaaaaataaactgaaggataatgatcggatcggtagcagtggattttattaatattttatgaacaactagatggtgttttgtcattttgtgaatgatgtgcaggtctgttgtataacagccctgcagagacaatcagtgtAGGCTTAGTTAATGTGTGCCCACTTacaacatgaatgaatgaatgaatacagcagatctgggtttccctctacaacatgaaggactggtttaataaatgcatccatcagtccataaacaccatgactgagacgtgcacactttagttcaattataacctgctatattgtagctgctgttactggatgattaatcgtgaaacgggtgtattttgtttcaactgtaacttgccctggttaaggatgtctgataagtaaattaaaaataatacagcaaaagttgtaccatttaaaatacaatatctaCTAGCATATATCTtcatgattacaataataaaataataaatagcaaatacttattgttgcacatggaaacgttttcttacggtAAAATGTAATGGTCTGAATAAATGTTGTCTATACAAGTTTAGCTATTCCTagtatctcttaacagaaacgtgtatttattacactttccaatcatgtaaagcataaaataataaacacaaaagtcctttccacatcaggctgtaTCACTCATAGTGTTGTATTCTgtctttaaaactaaaaacaagcaaaacccACAAATGCACAATCGCATCCCATAAGAGGGGATGAACTTCTCAACGGCCTGCTTTTACAAGAAAGCTCTGGGATGTGTCTGGCGCGGCACAGTACGGCACAGGCACTAAAGCCAGTGGAACTGAGGCATTAGTTGCACGTTTTCAATCCTCACATTAAACCTGCACAATCAGACTCCTACctcacaaaacagacacataggaattaaaatagaaaatgtttccAATGTTATTAACGAGCTGAATTTTCTTGTGTGTGCAAAGATGTACACATACGTGTAACATTAGGCCTGCTGCAAAAATTTGTGACACTAAAGGGCAGTTCCACTATGTATAATGGTTCATAATGGGTTGAAGACCTGAATGGAGATACCTTAATTACACAAGGTGGTGACATTATCATGggttttgctaaaaaaaaaaaagaaaaactacataaagcaaaaaaagaatTGCATCTATCCTGTGACTGATAACTTAAGCTGAGGAGGGAATACAGATTTGAAACGATTCACTGCTATTTGGAGTTCCAGATCTGCAAGTTAATGTGGATGGGCAGGTAGTCAACTGAAGCAGATGGAAGttaaccatttctgttttttaaagtcTGCTGCTATCATTTAATACACCACTGAAAATCACAACTGATACCACAAAGTTATTTTGAAACCTTGGAACAATTTTGAGTTCAGATActcaaaacattttccattaatttccAAATATGTTTgccaattttttaaatgtgtataatatgGAGGAATCCAGATTTTAA

Function

GO: NA

KEGG:

id description
K11519 DERL1; Derlin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156157 lncRNA downstream 255471 22653482 ~ 22653719 (-) True G124591
TU156148 lncRNA downstream 310635 22597999 ~ 22598555 (-) True G124582
TU156091 lncRNA downstream 470461 22436886 ~ 22438729 (-) True G124535
TU155970 lncRNA downstream 955519 21941177 ~ 21953671 (-) True G124434
TU155967 lncRNA downstream 983334 21925607 ~ 21925856 (-) True G124431
TU156251 lncRNA upstream 70006 22996819 ~ 22999108 (-) True G124669
TU156319 lncRNA upstream 211805 23138618 ~ 23296115 (-) False G124719
TU156386 lncRNA upstream 729171 23655984 ~ 23663572 (-) True G124765
TU156401 lncRNA upstream 946865 23873678 ~ 23928150 (-) True G124779
TU156515 lncRNA upstream 1484216 24411029 ~ 24411336 (-) True G124873
AMCG00002611 mRNA downstream 203445 22694206 ~ 22705745 (-) True AMCG00002611
AMCG00002610 mRNA downstream 288946 22598624 ~ 22620244 (-) True AMCG00002610
AMCG00002608 mRNA downstream 340202 22561117 ~ 22568988 (-) True AMCG00002608
AMCG00002606 mRNA downstream 519805 22381544 ~ 22389385 (-) True AMCG00002606
AMCG00002605 mRNA downstream 528398 22354118 ~ 22380792 (-) True AMCG00002605
AMCG00002615 mRNA upstream 28463 22955276 ~ 22958920 (-) True AMCG00002615
AMCG00002614 mRNA upstream 32902 22959715 ~ 22968693 (-) True AMCG00002614
AMCG00002617 mRNA upstream 44692 22971505 ~ 22986571 (-) True AMCG00002617
AMCG00002628 mRNA upstream 63440 22990253 ~ 22996520 (-) True AMCG00002628
AMCG00002627 mRNA upstream 73914 23000727 ~ 23012696 (-) True AMCG00002627
TU155250 other downstream 4919725 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 6069468 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 7962879 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 9254954 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9879784 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 159181 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 255108 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1334752 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1364974 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3377069 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile