RNA id: AMCG00002617


Basic Information

Item Value
RNA id AMCG00002617
length 4592
RNA type mRNA
GC content 0.50
exon number 28
gene id AMCG00002617
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22971505 ~ 22986571 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTACTTCTCGTCTCGGAGACGTACTGTCGGTTGTGACCTGCGCAGCTCTGACGTTTGTGGCGCCAGAAATCAAGGCATGGAAAAATAGAGAAAGACGGGTACTGTGCATTCGCCAAGTGTCTGACTAAAGCCGGAAAAGGACGTGGCTGAttgctgtttaatttaaatgtgattattcTTTAGCACTTAATTGATGGTCTGATTGGCACGATTACCAGCTAAAATGGTGATGTTGCGCAGCAGTACGGGCGCAGACCCCGCTGCCCCGAACCGCTCGGTGCTGGATTCGAGCTCCGAGTTTCTGTCGCTGCGCTGCTCGCCGAGGCGCTCCGGCCGCTGCAAGAGGGCCATGGAGGACAGTTCCAGTGGCACGGAAAACCACCCCACTAACGGCCATTTATCTGTAAAGGAGGAAGAGAACTTGGCAGTACAGTCCCTCCGAAAGACCAGAGGCCAGAAGGACAAGCAAGAAGTGTCTTTTGCAGatttaaattgtacaaatacTCCAGAAGTGGATGATAAAGGGGGAAAACATTGCACCAGAAAATCTGCAAGATTGCAAGCTGATGGTAAAAGTAATGATGATCAACCAAAAGATGCTTTAGATCAGGTTGAAGAATCGCCCACTCCCGGATGTGCCAGGAGCCGGCAAGATGGGATtgaagttgatgatggtaaagTGCGCCGCAGCTCGAGGATCAGCAGATACCGGCTCAACTCAAAGAATCAGTCTGTGCTGTATGACCGGCTCATTACCAACACCGCAGAAGCTGTGCTCCAGAAAATGGATCACATGAAAAAGATGCGCCGCCGGTTAAGAAGCAGGGACACGCAGGAAGCAAATCTCGGAATCTATTCAGGGGCCAAACGGAAGAGGGTGTCTGAAAGAACGGATGAGGAAACGACTGATAATCAAGAAGATGGTAATGAAGGGTTcactgaagaggaagatgaggatgaggatggaGAAGAGGATAACCAAAAACGCTATGAGTTTAGGCAAAGGAAGACGGTGGATCGCTACCAGGCTCCCTTGGATGAACCTAGGAAGCAGACCCTGTTTTACAATAGCCGCTCCTCGCCTACCAGAAGACGCTATCGTTTCAGCTCTACAGCCCCCAGGAGCCCCTACAGCAAAAGGAGAAATAACAGACGCAGACATGCCATCCACAGTAGTgactctacttcctcttcctccccttccTCTGATGATGAGGAGCACTTTGAAAGGCGCCGGAGTAAGAATCGAAACCGAGGAATGAACAGATGTCTGCCCATAAACTTTCGCAAAGAGGACCTGTTGGGAATCCACAAGGATAGAATGAAAATTGGAGCAAGTCTCGCTGATGTCGACCCCATGCAGGTCGACCCGTCAGTTCGCTTTGACAGCATCGGTGGGCTGACCAGTCACATCGCTGCCCTGAAGGAGATGGTGGTCTTCCCCCTGCTGTACCCAGAGGTGTTTGAGAGGTTCAAGATTCAGCCTCCACGagGCTGCTTGTTTTATGGACCTCCTGGTACTGGAAAAACCCTAGTAGCCCGGGTTCTGGCCAATGAGTGCAGCCAGGGGGACAGGAAGGTGGCGTTCTTCATGAGGAAGGGGGCAGATTGCTTGAGCAAATGGGTGGGGGAATCGGAACGGCAGCTCAGACTGTTATTTGATCAGGCATATCAGATGCGGCcctcaattattttctttgatgaGATTGATGGTTTGGCACCAGTTCGATCGAGCAGGCAAGACCAAATACACAGCTCCATTGTGTCCACTCTGCTGGCCTTGATGGATGGCTTGGACAGTCGGGGTGAGATCGTGGTGATTGGAGCTACCAACAGACTGGACTCCATTGATCCGGCTCTGAGACGACCAGGCCGATTTGACCGGGAGTTTCTCTTTGGGCTTCCAGACAGAGATGCTCGTAAAGAAATCCTGAAAATACATACCAGGCAATGGAGCCCCCAGCCCTCTGATGACTTTCTGGAAGAGCTGGCAGACAAGTGTGTTGGTTACTGTGGTGCAGACATTAAGGCAGTCTGTGCTGAGGCTGCGCTCTGTGCACTGCGGCGCCGGTATCCACAGATCTACGCCACCTCTGAGAAGCTGCAGCTGGATGTTGCCTCCATTAACATCAACAGCCGGGACTTCGCTATGGCATTGAGGAAGACTGTGCCAGCCTCCCAGCGGGCTGTGTCCTCTCCTGCCAAAGCCCTTTTGCCCATTGTACAGCCCCTGCTCTCTGGCGCTCTCGGCAGCATCCTGCAGGCCCTGCACAGAGTGTTCCCCCACGCAGAGGAGGGCCTCAAGAGGAAGAGGGACACCGatCTTACCGCTAATATTGTGGATGATGATCTAATGTACAGTGACGGCGAAGGGCACTCTGTTTGTGAAAATGGCCCTGTCCATGGACCAGCCAATCAAAAGCCCAGCTTCCTCCATTTTAACAGGACGGCCCATTATAACCCTACCTCGTACCGGCCCAGGCTACTTTTGGCTGGCCGGCCGGGGTCAGGTCAGAGTTCACATTTGGCACCTGCTGTCCTCCACTCCTTGGAGAAGTTCACAGTGTACACGCTGGACATGGCTGTGCTTTTTGGGGTCAGCTCCACATCCCCTGAGGAAACTTGTGCACAGCTTTTCTGTCAAGCAAAGAGAACTTCCCCCAGCATCTTGTACATTCCTCATATTAACCAATGGTGGGAGACTGTAGGATCTGCTCTGAGAGCCACCTTTCTCAGTTTGCTACAAGATATTCCTTCATTCTCTCCAATACTGCTTCTAGCCACATGCAATTCACCTCATGGAAGCCTATACACAGAGatccaGGATCTCTTCCGTATTGAATATGGAGAGGTGTTTGAAATTCAGCTCCCCAGCCAACAAGAGAGGAGGAAGTTCTTTGAGGATCTAATTCTAAAGCAAGGTCCCAAGCCTCCAGCCTCTAAGAAGAAAGCTgTGATCCAGGCCCTGGAAGTGCTCCCGGtggcccccccaccccctcctcgaCCGATGACCGAGGCAGAGCTGCGGCGgctggaggagcaggaggaggacaCCTTCCGGGAGCTGCGGCTCTTTCTGCGGGACGTCACCAACCGCCTGGCCCTGGACAAGCGCTTTAGGGCCTTCACCAAGCCTGTGGACATCGAGGAGGTCCCAGATTATACAACTGTCATTAAGCAGCCCATGGATCTGTCCACTGTTCTCTGCAAGATCGATTTGCACAAGTATGTTACTGTGAAGGAGTACATCCAGGATGTGGATCTCATCTGGAAAAATGCATTGGAATACAATCCAGACAAGGATCCTGCAGATAGATTAATACGCCATCGGGCCTGTGCTCTGAAGGACTCTGTACATGCAATCATCAGAGAAGAACTGGATGAGGATTTTGAAAAGCTTTGCGAGCAAATTCAAGAATCCAGGAGCAAAAGAGGTTGTTCAACATCCAAGTTTGCACCTTCCTATTACCATGTGCTGCCAAAGCAGGCCGCTGTTGCTGAGCCCAAGAAGATGGATGCCAGTGTAGTTAAAGAGACGGCCCACGTGTCCACAGTACCTGTGGCTGCCAGCACTCCACGCCCTGCAGCTGTTCTAAAGAAAAAACGCAGGCGATGCCGTTGGAGCTGTGGCATTATCAGCAAGAAAAAGAGCTCTGCTCAGACCTCCAAGGAGAACGTAAACATGTCGGGGGTTGAGGAGGACGGGAAGGCAGAAGACGAGGCCGAGAGCGATGAGGGTGAAGAAGAGCCCGACCACGACCCTGGCTGCAGCTTGGAGCAGACCGAGCTGGAGGCCTGTGATGGGGACTCCTCAATGGAGTGTGACCCCGAGCTGCCTGAGTGCGCGAAGCTGCAGCAGCCCGTTGACACGCCGGCACAACTGGAAGAGCCTGCAGAGCAACTGCCCCCCGAAACTCCCGAGCCCGAGAAGACGGATCGTCCGGAGGAGCCCAGAGAGACATCCCTCCTGCGTATGACTCGAGGGCGCCGCTCACAGgttgagcagcagcagcacatcaGCGTGGAGAAGGCCATGGAAATCCTCTCTGAACACACACCGCCGCTAATCGTTAACCACCAGGACCTAAAGGATCTGCTGAATGAAGTTGTGTCCAGGACTGAGGGATTTGAAGTTTATCAGCTTGAGAAGCTCTATGCACTGCTTTGTCAGTGCATTTATAGACACCGGAGAGACTATGATAAAACTGCACTAATACAGGAAATGAACAAAGAAATAGAAAACTTCACATAAATGATCGGATTtgaaaattcaaaattaaatgcatcacattaaaacaaatactttttttcttgtatcatttaattgtaaaaagcTTAAGACTacttattaaatgtttattttgctataaatatactttcatttagattatattcttaaatgaaatgttttgtatggcttaatgtattaaatgtttttagctTTCAACAGTGTAcaggatttattttcacttctgttttcattaaatataaagtCTGATTTcaaatatactgaacaaaactataaacacgacatgtaaagtgttggtcccctGTTTCATAAGCTGACATGAAAGATCCCAGAGGTTTTCC

Function

GO: NA

KEGG:

id description
K22531 ATAD2; ATPase family AAA domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156157 lncRNA downstream 317786 22653482 ~ 22653719 (-) True G124591
TU156148 lncRNA downstream 372950 22597999 ~ 22598555 (-) True G124582
TU156091 lncRNA downstream 532776 22436886 ~ 22438729 (-) True G124535
TU155970 lncRNA downstream 1017834 21941177 ~ 21953671 (-) True G124434
TU155967 lncRNA downstream 1045649 21925607 ~ 21925856 (-) True G124431
TU156251 lncRNA upstream 10248 22996819 ~ 22999108 (-) True G124669
TU156319 lncRNA upstream 152047 23138618 ~ 23296115 (-) False G124719
TU156386 lncRNA upstream 669413 23655984 ~ 23663572 (-) True G124765
TU156401 lncRNA upstream 887107 23873678 ~ 23928150 (-) True G124779
TU156515 lncRNA upstream 1424458 24411029 ~ 24411336 (-) True G124873
AMCG00002614 mRNA downstream 2812 22959715 ~ 22968693 (-) True AMCG00002614
AMCG00002615 mRNA downstream 12585 22955276 ~ 22958920 (-) True AMCG00002615
AMCG00002616 mRNA downstream 44692 22909190 ~ 22926813 (-) True AMCG00002616
AMCG00002611 mRNA downstream 265760 22694206 ~ 22705745 (-) True AMCG00002611
AMCG00002610 mRNA downstream 351261 22598624 ~ 22620244 (-) True AMCG00002610
AMCG00002628 mRNA upstream 3682 22990253 ~ 22996520 (-) True AMCG00002628
AMCG00002627 mRNA upstream 14156 23000727 ~ 23012696 (-) True AMCG00002627
AMCG00002626 mRNA upstream 32375 23018946 ~ 23028347 (-) True AMCG00002626
AMCG00002625 mRNA upstream 47237 23033808 ~ 23036859 (-) True AMCG00002625
AMCG00002629 mRNA upstream 195360 23181931 ~ 23192656 (-) False AMCG00002629
TU155250 other downstream 4982040 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 6131783 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 8025194 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 9317269 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9942099 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 99423 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 195350 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1274994 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1305216 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3317311 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021469 False 4056 mRNA 0.49 27 NC_007127.7 43319342 ~ 43335914 (-)
grasscarp (Ctenopharyngodon idella) CI01000027_02995394_03005981.mRNA True 3340 mRNA 0.50 24 CI01000027 2995394 ~ 3005997 (+)