RNA id: AMCG00002619


Basic Information

Item Value
RNA id AMCG00002619
length 3328
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00002619
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23028636 ~ 23033585 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAActagttcagtgtgtgtgtttacatccTCTGTGTTTTCCGCATTACCTTAACGATGCAGAGTTAAAAGGGTTATCTGATCACAGACACTTCAGGGGAACAGCGAAATATACAGACGGCATAAGTGCGTCTCCATGAACAACCTGAATGATCCTCCTGGGTGGAATATCCAACCAAACCAGCGAGGGGATGGGGATGGAAACAAGTGGAATTATGCCCTCCTAGTGCCAATGTTGGGCCTGGCTGCCTTCAGATGGATCTGGACCAGAGAGTCACAAAAGGAGATCCGGGAAGTGAAAGCAAAGTACAACCAAGACATGGAGTCCATAGCCCAGAATCTGGAGATGAAGTACAAGGAAGCTGTCCTGGAGAGCCGACGGGCCGCGGCTCACCTGGAGCTGCAGCTGGAGAAAGAGCGCCAGAGAGTGCAGGGCTACAGGCAGGCCCTCATGTCTCAGAGTCAGCAGCTTTTGGCAGAAAGAAAGCAACTGCAGCAGGACCGGGAGAAACTGGAAATGGAGAAAAATCAGCTTTTGCAGTCGGGTGCGGCGGGAGCCCTCTTGCGCAGTGCTTTGCAACGGGAAACCTTCTGGCAGCGTAAGGCCACGCTAGTCTTGAAGGAATTCGAAGAGGCATTGGTAGAACGGCAGAGTGCCTACTGCAGCGTCCTCCTGCCACGAGAGAAGCGCTTTGAGATGGAGAAGAACGTGCTCATCAAAGCCGCCAAAGACCCGCTCGCTGCTGAACTGAACATGGAAGcagatataaaatacattttcaaacacgACAAGCATTGCGCCGATCTTATGAACACAGACAAGCGCAAGAACGGCAGGCTGATGTGGCTTTACCTCAGGTACTGGGAGCTGCAAGTTGAGCTGCAGAAGTTTAAGCGAGTGGAGCGCTCTGTTGCTGGAACGCCGCCGAACTCTCAGTGACTTTGCAGCAAGACATAAAAACTTGAATCACCAATAGCCACCTGGAAGCTTTACGTTTCTTTTGCACTTCTGTAAGTCGGGAAAAGGGAGCTTTAAAGACAGGGATGCTGAACTCAGATGGAAGTGGATAGTAGACATCGTTGAGTTGCACGTGAACTGTAAAACTCATTTTCTTTCAGtataagaataattaaaaccattaagTGTCTGAAAGGAAAATCTATGctacttaatttaataaaaaagctGTATGTTATTTACTGCATGCCTATCATAGGGTATGTAAAGTGGTCAAACACCATAGATTGAAATACAATCATTAGTCTATCTTCAGATTATTGAATTAATATcatcataaatatttaattaataaagttctGTAAGTCACTGTTAAGcacttttcaaattatatatttataagaacTTAAATATGCAAAACGAAAAGAAAAGGTAATCACCTGAGGGGTTAAGGTATCTCAATAATATAACATTCTGTCATTAGGAAAGCACAGTTATATGCACAGAAAGAGCCTGATTTTTCCTGTAAGCAAATTGTGGGCTTACTGCCTGTGTAACTAATTTTGTTAATTCATACTCATGTATAATAGATCCATTTGTCTTCATCTGACGAGCCACCACTGGGCTTGTTGGGTTTGAACACCTCTAAAGGTCTGTTGTGGCTCATCAGATGAAGACAAATGCATCTGGCCTGTGTGAAATACTGGGACTTTTCCGGAACCTATTTCATTGACTTCAAATGCATAATGAAGCACTTCACTGTAGTTACTGCCATACTTCTTTGGTCTGAGTGGTTTCTAAGAGGACTGGCTGTCATCATTTAACACTAAAGACGttgttataataaaatatacagtatagttCTGAAGCTCAGTGGCAGGAATAGCTGAAAGTATTGCAGTTAACATTTCCACCACTTGATGTCAATGTACTCCACTCGGTGCGGTTTAAGAGGAGTATTTTTGTTCATGTATATACAGTCCCCTGTATCGATTGAAAGTAACACAGGATTCGATGTGATGAATTCTACAGCactgtgtgtcctgtgtcctgtctactgcactgtgtgtcctacaaaatatacacagggATTTCTTGGTAGGTGAAATTATGAGCTGGGCGATATATTTGTTGTGTTAAGTCTACTGTTTGATTTTCTTGGCGTCTGTTCAATAATCAACTCAAGAAACATACACAGTAATATCTCTTCTGCAGCACCAACACATTATCATTTGTGAATTCACAATCTGGCTAATAAGATTAAAATGATAGCAGATTGATCCAATAATATGGTCAGTGTTGTTTCAGGTCATGATTGTAATAACCATATACATATAGGACCAGGACTAATACAGGTATGCAAAAGCTagaaaaaggtttaattttgttttactcatgGTTTCAACTACATTTATGATGAATTTTTGAACATAAAAAAACTGCACCCTTGCATATTTTGTGTCCTGTTTCCCAAATAAGTAAATGGTATTGCAAATTCCAGTTGTACCCATAGATCTTTTTCACAGAGTTGTGTACTGcagatgtgtttgttgttgttgttattcatattatagCTTTTATGAACTGGACAGGATAAGTTTTTCCTGCAGTGTTTCTACACAAATGCCAGGATACAGTGCAGTGGCTTTCACTGTTGGTGTGTGGTCTTCGGCTGTGGGGGTGTCTGAAAACAGTGTGTCACATCTTACCGTTCTgtgtaaataaaggaaaaagtgGGGAAAGCAATTTTGATAAATCTGTGTAATTTGATTTACCTACATGTTGAGCATTACAGTTCCAGTGGTGTTCAGTAACATCcctgttattatttaatatgtgtcCGTGATAtaagtgagtgtatattattctGTGTGCTTTGTAGATCTGATCAGCACATAACAAGTGACAATTTGATTAGTTAACTGTTCACTACAATCCACAGATGTGGGTCTTTCGGACTGGCGGGTGTTAGTATAACTCTTTGTACAGCTCACTTGGAAGGTTAATTTCCCAGCAGTCTCCAAACATCAAATAACTCCTGTCTCTCTGTAATTCAATTGGTAGTATCTTTTGTTCATTAATCAAGGTGCTGTTGGCTTGATGTTTTCTATTGAGTCTTCAGAAAACTGAAGACAATCCCTACGGGAGAAATGTTATAAGCAGGTAAGCCTGGCTCTTCCTGTCTGGACCCTGCacgttatttttattatctcGGTCaaccctttttaattttttcatagCTCATAACAGAtcctttaattaataaaaaagagaaagaagaaattaaatctgtacaatgttttttttttatatataggaACTCTGCTGTTCTACACATTTGTTTagatcaggggtgtcagactccagtcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156249 lncRNA upstream 16636 23011435 ~ 23012000 (+) True G124668
TU156248 lncRNA upstream 25384 23002991 ~ 23003252 (+) True G124667
TU156247 lncRNA upstream 26404 23001788 ~ 23002232 (+) True G124666
TU156237 lncRNA upstream 36876 22990571 ~ 22991760 (+) True G124658
TU156235 lncRNA upstream 38538 22987545 ~ 22990098 (+) True AMCG00002622
TU156273 lncRNA downstream 184745 23218330 ~ 23276775 (+) True G124687
TU156357 lncRNA downstream 388388 23421973 ~ 23436320 (+) True G124740
TU156369 lncRNA downstream 572952 23606537 ~ 23606839 (+) True G124750
TU156392 lncRNA downstream 648428 23682013 ~ 23682226 (+) True G124770
TU156396 lncRNA downstream 796085 23829670 ~ 23829984 (+) True G124774
AMCG00002621 mRNA upstream 29151 22996873 ~ 22999485 (+) True AMCG00002621
AMCG00002622 mRNA upstream 38472 22987622 ~ 22990164 (+) False AMCG00002622
AMCG00002613 mRNA upstream 76808 22947203 ~ 22951828 (+) True AMCG00002613
AMCG00002612 mRNA upstream 82715 22927289 ~ 22945921 (+) True AMCG00002612
AMCG00002618 mRNA upstream 122124 22904029 ~ 22906512 (+) True AMCG00002618
AMCG00002624 mRNA downstream 10239 23043824 ~ 23055716 (+) True AMCG00002624
AMCG00002620 mRNA downstream 23197 23056782 ~ 23067800 (+) True AMCG00002620
AMCG00002623 mRNA downstream 35048 23068633 ~ 23073698 (+) False AMCG00002623
AMCG00002630 mRNA downstream 373981 23407566 ~ 23407966 (+) True AMCG00002630
AMCG00002631 mRNA downstream 619387 23652972 ~ 23677437 (+) True AMCG00002631
TU155679 other upstream 2752381 20274089 ~ 20276255 (+) True AMCG00002573
TU155541 other upstream 3896278 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 4190105 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 5043906 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 6068554 16958161 ~ 16960082 (+) True AMCG00002500
TU156269 other downstream 34539 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 119063 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 644350 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 1388667 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 3242006 26275591 ~ 26278973 (+) False AMCG00002684

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020208 True 1568 mRNA 0.44 3 NC_007127.7 43347966 ~ 43350505 (+)