RNA id: TU156269



Basic Information


Item Value
RNA id TU156269
length 1067
RNA type TUCP
GC content 0.48
exon number 3
gene id AMCG00002623
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23068124 ~ 23180043 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCGCAGCAGGAGAGTCTGCACATCCTTCAATACCCCAGATCTCAACACGGGCTGGCAGGACGATTCTGGAAagaatgaacaatatttaaccGTTGGATTAATCACTGTCCAgactttaataatattattattcaaaacatCTGAAGGGAATTCACCCACCTGAAGATATTTGGGATTTTTACAAAACGCTTTTctactcattttaaaataccactGAGAGGTTTTTGAGCTGGTCGAGGCTGCACCGGTGGGATCTGTATAATAATCCTCTTGCATCTAAAACGGGATGAAAATTGAGACTTAAATTCCAGTATCTGATAATGGGAGAATAGTCAGTAGATCAACATTACCGGCTAAGCAAATTGCCCCAAGTGTCAACttttaaagacaataaatacatcttgttactaatatttattttcaaagggaAGGACTAAAGCACTTTTTTAAGCACTTTTggagtatattttttatatttttaacttgtttttacctatacacacattaaaatgtgGGCATTTCTAGGTATTGCCAGCTTTAcctatatttataaaaaatgcgATGCCGTGCTGTTTTACACCAgcaaggagctgctgctggcCGGGCTGGCGCTGCTGGCGCTGCTGGCGCTGGCCTCGCTGCTCACCTTCCTCAGGTACCGCCGCGGCCCCCTGGCGCGCCTCTTCTGCACAGCTGCGAAAGACTGCAGCACTGAGGGGGACAGCGCACCCAAAAAGAGcggccgacacaggcagaggAAAGCTGGGGTGAAAGATTCAGCCTGTTCAGAGTGTCTCTCAAGGTCTGCCTCCTCAACCTCTCCAGACCCAGATGTCATCATTGTAGGAGCGGGGGTGCTGGGCTCCGCCATGGCCGCAGTTCTAGCCAGGGACGGCAGGAAGGTGACGGTCATCGAGAGGGACCTGCGGGAGCCAGACAGGATTGTGGGGGAGCTGCTGCAGCCGGGAGGGTATCGTGCCTTGAAGGAGCTGGGACTGGAAAGCTTAGTGGAAGGGGTTGACGTGCACACAGTGAACGGCTACGTCATTCACGACAGAGAGAGCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156249 lncRNA upstream 56124 23011435 ~ 23012000 (+) True G124668
TU156248 lncRNA upstream 64872 23002991 ~ 23003252 (+) True G124667
TU156247 lncRNA upstream 65892 23001788 ~ 23002232 (+) True G124666
TU156237 lncRNA upstream 76364 22990571 ~ 22991760 (+) True G124658
TU156235 lncRNA upstream 78026 22987545 ~ 22990098 (+) True AMCG00002622
TU156273 lncRNA downstream 38287 23218330 ~ 23276775 (+) True G124687
TU156357 lncRNA downstream 241930 23421973 ~ 23436320 (+) True G124740
TU156369 lncRNA downstream 426494 23606537 ~ 23606839 (+) True G124750
TU156392 lncRNA downstream 501970 23682013 ~ 23682226 (+) True G124770
TU156396 lncRNA downstream 649627 23829670 ~ 23829984 (+) True G124774
AMCG00002620 mRNA upstream 324 23056782 ~ 23067800 (+) True AMCG00002620
AMCG00002624 mRNA upstream 12408 23043824 ~ 23055716 (+) True AMCG00002624
AMCG00002619 mRNA upstream 34539 23028636 ~ 23033585 (+) True AMCG00002619
AMCG00002621 mRNA upstream 68639 22996873 ~ 22999485 (+) True AMCG00002621
AMCG00002622 mRNA upstream 77960 22987622 ~ 22990164 (+) False AMCG00002622
AMCG00002630 mRNA downstream 227523 23407566 ~ 23407966 (+) True AMCG00002630
AMCG00002631 mRNA downstream 472929 23652972 ~ 23677437 (+) True AMCG00002631
AMCG00002635 mRNA downstream 787535 23967578 ~ 23985386 (+) True AMCG00002635
AMCG00002637 mRNA downstream 817204 23997247 ~ 24007711 (+) True AMCG00002637
AMCG00002636 mRNA downstream 839461 24019504 ~ 24036531 (+) True AMCG00002636
TU155679 other upstream 2791869 20274089 ~ 20276255 (+) True AMCG00002573
TU155541 other upstream 3935766 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 4229593 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 5083394 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 6108042 16958161 ~ 16960082 (+) True AMCG00002500
TU156391 other downstream 497892 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 1242209 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 3095548 26275591 ~ 26278973 (+) False AMCG00002684
TU156956 other downstream 3182169 26362212 ~ 26369525 (+) True G125219

Expression Profile